5D0A

Crystal structure of epoxyqueuosine reductase with cleaved RNA stem loop

Summary for 5D0A

Related5D08 5D0B
DescriptorEpoxyqueuosine reductase, RNA (5'-R(*G*CP*AP*GP*AP*CP*UP*GP*UP*AP*AP*AP*UP*CP*UP*GP*C)-3'), IRON/SULFUR CLUSTER, ... (7 entities in total)
Functional Keywordsb12, trna modification, heat-domain, queuosine, oxidoreductase-rna complex, oxidoreductase/rna
Biological sourceBacillus subtilis (strain 168)
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Cellular locationCytoplasm  P97030
Total number of polymer chains6
Total molecular weight214683.94
Authors
Dowling, D.P.,Miles, Z.D.,Kohrer, C.,Bandarian, V.,Drennan, C.L. (deposition date: 2015-08-03, release date: 2016-09-28, Last modification date: 2017-09-20)
Primary citation
Dowling, D.P.,Miles, Z.D.,Kohrer, C.,Maiocco, S.J.,Elliott, S.J.,Bandarian, V.,Drennan, C.L.
Molecular basis of cobalamin-dependent RNA modification.
Nucleic Acids Res., 44:9965-9976, 2016
PubMed: 27638883 (PDB entries with the same primary citation)
DOI: 10.1093/nar/gkw806
MImport into Mendeley
Experimental method
X-RAY DIFFRACTION (2.1 Å)
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Structure validation

RfreeClashscoreRamachandran outliersSidechain outliersRSRZ outliersRNA backbone0.227400.5%1.2%0.63MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution