5C01

Crystal Structure of kinase

Summary for 5C01

• Entry DOI: 10.2210/pdb5c01/pdb
• Descriptor: NON-RECEPTOR TYROSINE-PROTEIN KINASE TYK2, UNKNOWN LIGAND, 1,2-ETHANEDIOL, ... (5 entities in total)
• Functional Keywords: pseudokinase domain, transferase
• Biological source: Homo sapiens
• Total number of polymer chains: 2
• Total formula weight: 77229.35

Authors

Min, X.,Wang, Z.,Walker, N. (deposition date: 2015-06-12, release date: 2015-09-16, Last modification date: 2015-11-18)

Primary citation

Min, X.,Ungureanu, D.,Maxwell, S.,Hammaren, H.,Thibault, S.,Hillert, E.K.,Ayres, M.,Greenfield, B.,Eksterowicz, J.,Gabel, C.,Walker, N.,Silvennoinen, O.,Wang, Z.
Structural and Functional Characterization of the JH2 Pseudokinase Domain of JAK Family Tyrosine Kinase 2 (TYK2).
J.Biol.Chem., 290:27261-27270, 2015

PubMed Abstract: JAK (Janus family of cytoplasmic tyrosine kinases) family tyrosine kinase 2 (TYK2) participates in signaling through cytokine receptors involved in immune responses and inflammation. JAKs are characterized by dual kinase domain: a tyrosine kinase domain (JH1) that is preceded by a pseudokinase domain (JH2). The majority of disease-associated mutations in JAKs map to JH2, demonstrating its central regulatory function. JH2s were considered catalytically inactive, but JAK2 JH2 was found to have low autoregulatory catalytic activity. Whether the other JAK JH2s share ATP binding and enzymatic activity has been unclear. Here we report the crystal structure of TYK2 JH2 in complex with adenosine 5'-O-(thiotriphosphate) (ATP-γS) and characterize its nucleotide binding by biochemical and biophysical methods. TYK2 JH2 did not show phosphotransfer activity, but it binds ATP and the nucleotide binding stabilizes the protein without inducing major conformational changes. Mutation of the JH2 ATP-binding pocket increased basal TYK2 phosphorylation and downstream signaling. The overall structural characteristics of TYK2 JH2 resemble JAK2 JH2, but distinct stabilizing molecular interactions around helix αAL in the activation loop provide a structural basis for differences in substrate access and catalytic activities among JAK family JH2s. The structural and biochemical data suggest that ATP binding is functionally important for both TYK2 and JAK2 JH2s, whereas the regulatory phosphorylation appears to be a unique property of JAK2. Finally, the co-crystal structure of TYK2 JH2 complexed with a small molecule inhibitor demonstrates that JH2 is accessible to ATP-competitive compounds, which offers novel approaches for targeting cytokine signaling as well as potential therapeutic applications.

PubMed: 26359499
DOI: 10.1074/jbc.M115.672048

Experimental method

X-RAY DIFFRACTION (2.15 Å)