Structure of delta7-DgkA-syn in 7.9 MAG to 2.18 angstrom resolution

Summary for 4UXZ

Related4UXW 4UXX
DescriptorDIACYLGLYCEROL KINASE-DELTA 7, (2S)-2,3-dihydroxypropyl (7Z)-hexadec-7-enoate, (2R)-2,3-dihydroxypropyl (7Z)-hexadec-7-enoate, ... (7 entities in total)
Functional Keywordstransferase, diacylglyerol kinase, in meso crystallization, lipid cubic phase, lipidic cubic phase, lipid mesophase, lipidic mesophase, membrane protein, monoacylglycerol
Biological sourceESCHERICHIA COLI K-12
Total number of polymer chains6
Total molecular weight89153.62
Li, D.,Howe, N.,Caffrey, M. (deposition date: 2014-08-27, release date: 2015-09-30, Last modification date: 2019-04-03)
Primary citation
Li, D.,Stansfeld, P.J.,Sansom, M.S.P.,Keogh, A.,Vogeley, L.,Howe, N.,Lyons, J.A.,Aragao, D.,Fromme, P.,Fromme, R.,Basu, S.,Grotjohann, I.,Kupitz, C.,Rendek, K.,Weierstall, U.,Zatsepin, N.A.,Cherezov, V.,Liu, W.,Bandaru, S.,English, N.J.,Gati, C.,Barty, A.,Yefanov, O.,Chapman, H.N.,Diederichs, K.,Messerschmidt, M.,Boutet, S.,Williams, G.J.,Marvin Seibert, M.,Caffrey, M.
Ternary Structure Reveals Mechanism of a Membrane Diacylglycerol Kinase.
Nat.Commun., 6:10140-, 2015
PubMed: 26673816 (PDB entries with the same primary citation)
DOI: 10.1038/NCOMMS10140
MImport into Mendeley
Experimental method

Structure validation

RfreeClashscoreRamachandran outliersSidechain outliersRSRZ outliers 0.23640 0.6% 12.5%MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution
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PDB entries from 2020-08-05