4LD2

Crystal structure of NE0047 in complex with cytidine

Summary for 4LD2

Related4HRQ 4HRW 2G84 4LC5 4LCN 4LCO 4LDP 4LD4
DescriptorCytidine and deoxycytidylate deaminase zinc-binding region, ZINC ION, 4-AMINO-1-BETA-D-RIBOFURANOSYL-2(1H)-PYRIMIDINONE, ... (5 entities in total)
Functional Keywordscda fold, deaminase, hydrolase
Biological sourceNitrosomonas europaea
Total number of polymer chains2
Total molecular weight41671.1
Authors
Bitra, A.,Biswas, A.,Anand, R. (deposition date: 2013-06-24, release date: 2014-01-22)
Primary citation
Bitra, A.,Biswas, A.,Anand, R.
Structural basis of the substrate specificity of cytidine deaminase superfamily Guanine deaminase
Biochemistry, 52:8106-8114, 2013
PubMed: 24083949 (PDB entries with the same primary citation)
DOI: 10.1021/bi400818e
MImport into Mendeley
Experimental method
X-RAY DIFFRACTION (1.55 Å)
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Structure validation

RfreeClashscoreRamachandran outliersSidechain outliersRSRZ outliers0.21570.5%0.7%6.2%MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution

More Asymmetric unit images

Molmil generated image of 4ld2
no rotation
Molmil generated image of 4ld2
rotated about x axis by 90°
Molmil generated image of 4ld2
rotated about y axis by 90°