Crystal structure of NE0047 in complex with cytidine

Summary for 4LD2

Related4HRQ 4HRW 2G84 4LC5 4LCN 4LCO 4LDP 4LD4
DescriptorCytidine and deoxycytidylate deaminase zinc-binding region, ZINC ION, 4-AMINO-1-BETA-D-RIBOFURANOSYL-2(1H)-PYRIMIDINONE, ... (5 entities in total)
Functional Keywordscda fold, deaminase, hydrolase
Biological sourceNitrosomonas europaea
Total number of polymer chains2
Total molecular weight41671.1
Bitra, A.,Biswas, A.,Anand, R. (deposition date: 2013-06-24, release date: 2014-01-22)
Primary citation
Bitra, A.,Biswas, A.,Anand, R.
Structural basis of the substrate specificity of cytidine deaminase superfamily Guanine deaminase
Biochemistry, 52:8106-8114, 2013
PubMed: 24083949 (PDB entries with the same primary citation)
DOI: 10.1021/bi400818e
MImport into Mendeley
Experimental method

Structure validation

RfreeClashscoreRamachandran outliersSidechain outliersRSRZ outliers0.21570.5%0.7%6.2%MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution
Download full validation reportDownload
PDB entries from 2020-07-15