4JDV

Crystal structure of germ-line precursor of NIH45-46 Fab

Summary for 4JDV

Related4JDT
DescriptorFab heavy chain, Fab light chain, SULFATE ION, ... (7 entities in total)
Functional Keywordsig fold, anti hiv antibody, immune system
Biological sourceHomo sapiens
Total number of polymer chains4
Total molecular weight97700.75
Authors
Diskin, R.,Scharf, L.,Bjorkman, P.J. (deposition date: 2013-02-25, release date: 2013-03-20, Last modification date: 2013-05-08)
Primary citation
Scharf, L.,West, A.P.,Gao, H.,Lee, T.,Scheid, J.F.,Nussenzweig, M.C.,Bjorkman, P.J.,Diskin, R.
Structural basis for HIV-1 gp120 recognition by a germ-line version of a broadly neutralizing antibody.
Proc.Natl.Acad.Sci.USA, 110:6049-6054, 2013
PubMed: 23524883 (PDB entries with the same primary citation)
DOI: 10.1073/pnas.1303682110
MImport into Mendeley
Experimental method
X-RAY DIFFRACTION (1.65 Å)
?

Structure validation

RfreeClashscoreRamachandran outliersSidechain outliersRSRZ outliers0.205800.8%2.7%MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution

More Asymmetric unit images

Molmil generated image of 4jdv
no rotation
Molmil generated image of 4jdv
rotated about x axis by 90°
Molmil generated image of 4jdv
rotated about y axis by 90°

More Biological unit images

Molmil generated image of 4jdv
no rotation
Molmil generated image of 4jdv
rotated about x axis by 90°
Molmil generated image of 4jdv
rotated about y axis by 90°
(*)In the case of coarse surface representation, the asymmetric unit is shown as red ribbon representation.
Coordinate files for Biological unit (4jdv.pdb1.gz [147.86 KB])
Coordinate files for Biological unit (4jdv.pdb2.gz [143.93 KB])