Ternary complex of dna polymerase beta with a dideoxy terminated primer and 2'-deoxyguanosine 5'-beta, gamma-monochlororomethylene triphosphate:binding of S-isomer

Summary for 4DOC

Related4DO9 4DOA 4DOB
DescriptorDNA polymerase beta, C C G A C C G C G C A T C A G C, G C T G A T G C G (DOC), ... (9 entities in total)
Functional Keywordsstereoselectivity, polymerase, dna polymerase, transferase-dna complex, transferase/dna
Biological sourceHomo sapiens (human)
Cellular locationNucleus P06746
Total number of polymer chains4
Total molecular weight48462.04
Batra, V.K. (deposition date: 2012-02-09, release date: 2012-06-13)
Primary citation
Wu, Y.,Zakharova, V.M.,Kashemirov, B.A.,Goodman, M.F.,Batra, V.K.,Wilson, S.H.,McKenna, C.E.
Beta,gamma-CHF- and beta,gamma-CHCl-dGTP Diastereomers: Synthesis, Discrete (31)P NMR Signatures, and Absolute Configurations of New Stereochemical Probes for DNA Polymerases
J.Am.Chem.Soc., 134:8734-8737, 2012
PubMed: 22397499 (PDB entries with the same primary citation)
DOI: 10.1021/ja300218x
MImport into Mendeley
Experimental method

Structure validation

RfreeClashscoreRamachandran outliersSidechain outliersRSRZ outliers 0.23830 0.7% 3.1%MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution
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PDB entries from 2020-10-28