4B52

Crystal structure of Gentlyase, the neutral metalloprotease of Paenibacillus polymyxa

Summary for 4B52

• Entry DOI: 10.2210/pdb4b52/pdb
• Related PRD ID: PRD_000638
• Descriptor: BACILLOLYSIN, ZINC ION, CALCIUM ION, ... (6 entities in total)
• Functional Keywords: hydrolase, thermolysin like protease
• Biological source: PAENIBACILLUS POLYMYXA
• Total number of polymer chains: 2
• Total formula weight: 66296.96

Authors

Ruf, A.,Stihle, M.,Benz, J.,Schmidt, M.,Sobek, H. (deposition date: 2012-08-02, release date: 2013-01-09, Last modification date: 2023-12-20)

Primary citation

Ruf, A.,Stihle, M.,Benz, J.,Schmidt, M.,Sobek, H.
Structure of Gentlyase, the Neutral Metalloprotease of Paenibacillus Polymyxa
Acta Crystallogr.,Sect.D, 69:24-, 2013

PubMed Abstract: Gentlyase is a bacterial extracellular metalloprotease that is widely applied in cell culture and for tissue dissociation and that belongs to the family of thermolysin-like proteases. The structure of thermolysin has been known since 1972 and that of Bacillus cereus neutral protease since 1992. However, the structure determination of other Bacillus neutral proteases has been hindered by their tendency to cannibalistic autolysis. High calcium conditions that allow the concentration and crystallization of the active Gentlyase metalloprotease without autoproteolysis were identified using thermal fluorescent shift assays. X-ray structures of the protease were solved in the absence and in the presence of the inhibitor phosphoramidon at 1.59 and 1.76 Å resolution, respectively. No domain movement was observed upon inhibitor binding, although such movement is thought to be a general feature of the thermolysin-like protease family. Further analysis of the structure shows that the observed calcium dependency of Gentlyase stability may arise from a partly degenerated calcium site Ca1-2 and a deletion near site Ca3.

PubMed: 23275160
DOI: 10.1107/S0907444912041169

Experimental method

X-RAY DIFFRACTION (1.76 Å)