3PFP

Structure of 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase from Mycobacterium tuberculosis in complex with an active site inhibitor

3PFP の概要

• エントリーDOI: 10.2210/pdb3pfp/pdb
• 関連するPDBエントリー: 2B7O 3KGF 3NUD 3NUE 3NV8
• 分子名称: Probable 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase AroG, MANGANESE (II) ION, (2S)-2,7-bis(phosphonooxy)heptanoic acid, ... (7 entities in total)
• 機能のキーワード: shikimate pathway, mycobacterium tuberculosis, dah7p synthase, aromatic biosynthesis, tim barrel, transferase-transferase inhibitor complex, transferase/transferase inhibitor
• 由来する生物種: Mycobacterium tuberculosis
• タンパク質・核酸の鎖数: 2
• 化学式量合計: 103186.75

構造登録者

Reichau, S.,Jiao, W.,Walker, S.R.,Hutton, R.D.,Parker, E.J.,Baker, E.N. (登録日: 2010-10-28, 公開日: 2011-03-16, 最終更新日: 2023-11-01)

主引用文献

Reichau, S.,Jiao, W.,Walker, S.R.,Hutton, R.D.,Baker, E.N.,Parker, E.J.
Potent inhibitors of a shikimate pathway enzyme from Mycobacterium tuberculosis: combining mechanism- and modeling-based design
J.Biol.Chem., 286:16197-16207, 2011

PubMed Abstract: Tuberculosis remains a serious global health threat, with the emergence of multidrug-resistant strains highlighting the urgent need for novel antituberculosis drugs. The enzyme 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase (DAH7PS) catalyzes the first step of the shikimate pathway for the biosynthesis of aromatic compounds. This pathway has been shown to be essential in Mycobacterium tuberculosis, the pathogen responsible for tuberculosis. DAH7PS catalyzes a condensation reaction between P-enolpyruvate and erythrose 4-phosphate to give 3-deoxy-D-arabino-heptulosonate 7-phosphate. The enzyme reaction mechanism is proposed to include a tetrahedral intermediate, which is formed by attack of an active site water on the central carbon of P-enolpyruvate during the course of the reaction. Molecular modeling of this intermediate into the active site reported in this study shows a configurational preference consistent with water attack from the re face of P-enolpyruvate. Based on this model, we designed and synthesized an inhibitor of DAH7PS that mimics this reaction intermediate. Both enantiomers of this intermediate mimic were potent inhibitors of M. tuberculosis DAH7PS, with inhibitory constants in the nanomolar range. The crystal structure of the DAH7PS-inhibitor complex was solved to 2.35 Å. Both the position of the inhibitor and the conformational changes of active site residues observed in this structure correspond closely to the predictions from the intermediate modeling. This structure also identifies a water molecule that is located in the appropriate position to attack the re face of P-enolpyruvate during the course of the reaction, allowing the catalytic mechanism for this enzyme to be clearly defined.

PubMed: 21454647
DOI: 10.1074/jbc.M110.211649

実験手法

X-RAY DIFFRACTION (2.35 Å)