3KCJ

Room temperature neutron structure of apo-D-Xylose Isomerase (refined jointly with X-ray structure 3KBJ)

Summary for 3KCJ

Related3KBJ 3KBM 3KBN 3KBS 3KBV 3KBW 3KCL 3KCO
DescriptorXylose isomerase (2 entities in total)
Functional Keywordsd-xylose isomerase, apo-form, carbohydrate metabolism, metal-binding, pentose shunt, xylose metabolism, isomerase
Biological sourceStreptomyces rubiginosus
Cellular locationCytoplasm P24300
Total number of polymer chains1
Total molecular weight43283.3
Authors
Kovalevsky, A.Y.,Langan, P. (deposition date: 2009-10-21, release date: 2010-09-29, Last modification date: 2017-11-01)
Primary citation
Kovalevsky, A.Y.,Hanson, B.L.,Mason, S.A.,Yoshida, T.,Fisher, S.Z.,Mustyakimov, M.,Forsyth, V.T.,Blakeley, M.P.,Keen, D.A.,Langan, P.
Identification of the Elusive Hydronium Ion Exchanging Roles with a Proton in an Enzyme at Lower pH Values
Angew.Chem.Int.Ed.Engl., 50:7520-7523, 2011
PubMed: 21604345 (PDB entries with the same primary citation)
DOI: 10.1002/anie.201101753
MImport into Mendeley
Experimental method
NEUTRON DIFFRACTION (1.8 Å)
X-RAY DIFFRACTION (2 Å)
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Structure validation

ClashscoreRamachandran outliersSidechain outliersRSRZ outliers00.3%1.6%4.4%MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution

More Asymmetric unit images

Molmil generated image of 3kcj
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Molmil generated image of 3kcj
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Molmil generated image of 3kcj
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More Biological unit images

Molmil generated image of 3kcj
no rotation
Molmil generated image of 3kcj
rotated about x axis by 90°
Molmil generated image of 3kcj
rotated about y axis by 90°
(*)In the case of coarse surface representation, the asymmetric unit is shown as red ribbon representation.
Coordinate files for Biological unit (3kcj.pdb1.gz [480.72 KB])