3KBJ

Room temperature X-ray structure of apo-D-Xylose Isomerase

Summary for 3KBJ

Related3KBM 3KBN 3KBS 3KBV 3KBW 3KCJ 3KCL 3KCO
DescriptorXylose isomerase (2 entities in total)
Functional Keywordsapo-form, enzyme, sugar conversion, carbohydrate metabolism, metal-binding, pentose shunt, xylose metabolism, isomerase
Biological sourceStreptomyces rubiginosus
Cellular locationCytoplasm P24300
Total number of polymer chains1
Total molecular weight43283.3
Authors
Kovalevsky, A.Y.,Hanson, L.,Langan, P. (deposition date: 2009-10-20, release date: 2010-09-29, Last modification date: 2011-08-31)
Primary citation
Kovalevsky, A.Y.,Hanson, B.L.,Mason, S.A.,Yoshida, T.,Fisher, S.Z.,Mustyakimov, M.,Forsyth, V.T.,Blakeley, M.P.,Keen, D.A.,Langan, P.
Identification of the Elusive Hydronium Ion Exchanging Roles with a Proton in an Enzyme at Lower pH Values.
Angew.Chem.Int.Ed.Engl., 50:7520-7523, 2011
PubMed: 21604345 (PDB entries with the same primary citation)
DOI: 10.1002/anie.201101753
MImport into Mendeley
Experimental method
X-RAY DIFFRACTION (2 Å)
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Structure validation

RfreeClashscoreRamachandran outliersSidechain outliersRSRZ outliers0.19440.3%2.6%1.5%MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution

More Asymmetric unit images

Molmil generated image of 3kbj
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Molmil generated image of 3kbj
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Molmil generated image of 3kbj
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More Biological unit images

Molmil generated image of 3kbj
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Molmil generated image of 3kbj
rotated about x axis by 90°
Molmil generated image of 3kbj
rotated about y axis by 90°
(*)In the case of coarse surface representation, the asymmetric unit is shown as red ribbon representation.
Coordinate files for Biological unit (3kbj.pdb1.gz [264.58 KB])