Crystal structure of pyridoxal phosphate biosynthetic protein from Burkholderia pseudomallei

Summary for 3GK0

DescriptorPyridoxine 5'-phosphate synthase, PHOSPHATE ION, 1-DEOXY-D-XYLULOSE-5-PHOSPHATE, ... (4 entities in total)
Functional Keywordsdecode, ssgcid, niaid, sbri, pyridoxine biosynthesis, transferase, structural genomics, seattle structural genomics center for infectious disease
Biological sourceBurkholderia pseudomallei
Cellular locationCytoplasm  Q3JQ80
Total number of polymer chains8
Total molecular weight239820.12
Seattle Structural Genomics Center for Infectious Disease (SSGCID) (deposition date: 2009-03-09, release date: 2009-03-17, Last modification date: 2017-11-01)
Primary citation
Baugh, L.,Gallagher, L.A.,Patrapuvich, R.,Clifton, M.C.,Gardberg, A.S.,Edwards, T.E.,Armour, B.,Begley, D.W.,Dieterich, S.H.,Dranow, D.M.,Abendroth, J.,Fairman, J.W.,Fox, D.,Staker, B.L.,Phan, I.,Gillespie, A.,Choi, R.,Nakazawa-Hewitt, S.,Nguyen, M.T.,Napuli, A.,Barrett, L.,Buchko, G.W.,Stacy, R.,Myler, P.J.,Stewart, L.J.,Manoil, C.,Van Voorhis, W.C.
Combining functional and structural genomics to sample the essential Burkholderia structome.
Plos One, 8:e53851-e53851, 2013
PubMed: 23382856 (PDB entries with the same primary citation)
DOI: 10.1371/journal.pone.0053851
MImport into Mendeley
Experimental method

Structure validation

RfreeClashscoreRamachandran outliersSidechain outliersRSRZ outliers 0.2434 0.1% 5.6% 0.9%MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution
Download full validation reportDownload
PDB entries from 2020-09-23