3GK0
Crystal structure of pyridoxal phosphate biosynthetic protein from Burkholderia pseudomallei
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0005737 | cellular_component | cytoplasm |
A | 0005829 | cellular_component | cytosol |
A | 0008615 | biological_process | pyridoxine biosynthetic process |
A | 0016740 | molecular_function | transferase activity |
A | 0016769 | molecular_function | transferase activity, transferring nitrogenous groups |
A | 0033856 | molecular_function | pyridoxine 5'-phosphate synthase activity |
B | 0005737 | cellular_component | cytoplasm |
B | 0005829 | cellular_component | cytosol |
B | 0008615 | biological_process | pyridoxine biosynthetic process |
B | 0016740 | molecular_function | transferase activity |
B | 0016769 | molecular_function | transferase activity, transferring nitrogenous groups |
B | 0033856 | molecular_function | pyridoxine 5'-phosphate synthase activity |
C | 0005737 | cellular_component | cytoplasm |
C | 0005829 | cellular_component | cytosol |
C | 0008615 | biological_process | pyridoxine biosynthetic process |
C | 0016740 | molecular_function | transferase activity |
C | 0016769 | molecular_function | transferase activity, transferring nitrogenous groups |
C | 0033856 | molecular_function | pyridoxine 5'-phosphate synthase activity |
D | 0005737 | cellular_component | cytoplasm |
D | 0005829 | cellular_component | cytosol |
D | 0008615 | biological_process | pyridoxine biosynthetic process |
D | 0016740 | molecular_function | transferase activity |
D | 0016769 | molecular_function | transferase activity, transferring nitrogenous groups |
D | 0033856 | molecular_function | pyridoxine 5'-phosphate synthase activity |
E | 0005737 | cellular_component | cytoplasm |
E | 0005829 | cellular_component | cytosol |
E | 0008615 | biological_process | pyridoxine biosynthetic process |
E | 0016740 | molecular_function | transferase activity |
E | 0016769 | molecular_function | transferase activity, transferring nitrogenous groups |
E | 0033856 | molecular_function | pyridoxine 5'-phosphate synthase activity |
F | 0005737 | cellular_component | cytoplasm |
F | 0005829 | cellular_component | cytosol |
F | 0008615 | biological_process | pyridoxine biosynthetic process |
F | 0016740 | molecular_function | transferase activity |
F | 0016769 | molecular_function | transferase activity, transferring nitrogenous groups |
F | 0033856 | molecular_function | pyridoxine 5'-phosphate synthase activity |
G | 0005737 | cellular_component | cytoplasm |
G | 0005829 | cellular_component | cytosol |
G | 0008615 | biological_process | pyridoxine biosynthetic process |
G | 0016740 | molecular_function | transferase activity |
G | 0016769 | molecular_function | transferase activity, transferring nitrogenous groups |
G | 0033856 | molecular_function | pyridoxine 5'-phosphate synthase activity |
H | 0005737 | cellular_component | cytoplasm |
H | 0005829 | cellular_component | cytosol |
H | 0008615 | biological_process | pyridoxine biosynthetic process |
H | 0016740 | molecular_function | transferase activity |
H | 0016769 | molecular_function | transferase activity, transferring nitrogenous groups |
H | 0033856 | molecular_function | pyridoxine 5'-phosphate synthase activity |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE PO4 B 258 |
Chain | Residue |
B | THR29 |
B | TYR31 |
B | HOH271 |
B | HOH430 |
E | HIS203 |
E | HIS223 |
site_id | AC2 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE DXP C 258 |
Chain | Residue |
C | HIS228 |
C | HOH283 |
H | THR29 |
H | TYR31 |
C | TYR204 |
C | HIS223 |
C | ALA224 |
site_id | AC3 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE PO4 D 258 |
Chain | Residue |
D | HIS203 |
D | HIS223 |
D | ALA224 |
D | HOH267 |
F | THR29 |
F | TYR31 |
site_id | AC4 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE PO4 E 258 |
Chain | Residue |
B | HIS203 |
B | HIS223 |
E | THR29 |
E | TYR31 |
E | HOH266 |
site_id | AC5 |
Number of Residues | 9 |
Details | BINDING SITE FOR RESIDUE DXP F 258 |
Chain | Residue |
D | THR29 |
D | TYR31 |
F | TYR204 |
F | HIS223 |
F | ALA224 |
F | HIS228 |
F | HOH287 |
F | HOH342 |
F | HOH799 |
site_id | AC6 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE PO4 G 258 |
Chain | Residue |
A | HIS203 |
A | HIS223 |
A | ALA224 |
G | THR29 |
G | HOH271 |
G | HOH442 |
site_id | AC7 |
Number of Residues | 9 |
Details | BINDING SITE FOR RESIDUE DXP G 259 |
Chain | Residue |
A | THR29 |
A | TYR31 |
G | HIS203 |
G | HIS223 |
G | ALA224 |
G | HIS228 |
G | HOH267 |
G | HOH273 |
G | HOH850 |
site_id | AC8 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE PO4 H 258 |
Chain | Residue |
C | THR29 |
C | TYR31 |
H | HIS203 |
H | ALA224 |
H | HOH269 |
H | HOH270 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 16 |
Details | ACT_SITE: Proton acceptor => ECO:0000255|HAMAP-Rule:MF_00279 |
Chain | Residue | Details |
A | HIS52 | |
E | GLU79 | |
F | HIS52 | |
F | GLU79 | |
G | HIS52 | |
G | GLU79 | |
H | HIS52 | |
H | GLU79 | |
A | GLU79 | |
B | HIS52 | |
B | GLU79 | |
C | HIS52 | |
C | GLU79 | |
D | HIS52 | |
D | GLU79 | |
E | HIS52 |
site_id | SWS_FT_FI2 |
Number of Residues | 8 |
Details | ACT_SITE: Proton donor => ECO:0000255|HAMAP-Rule:MF_00279 |
Chain | Residue | Details |
A | HIS200 | |
B | HIS200 | |
C | HIS200 | |
D | HIS200 | |
E | HIS200 | |
F | HIS200 | |
G | HIS200 | |
H | HIS200 |
site_id | SWS_FT_FI3 |
Number of Residues | 64 |
Details | BINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_00279 |
Chain | Residue | Details |
A | ASN16 | |
B | ASP18 | |
B | ARG27 | |
B | ARG54 | |
B | HIS59 | |
B | THR109 | |
B | GLY201 | |
B | GLY222 | |
C | ASN16 | |
C | ASP18 | |
C | ARG27 | |
A | ASP18 | |
C | ARG54 | |
C | HIS59 | |
C | THR109 | |
C | GLY201 | |
C | GLY222 | |
D | ASN16 | |
D | ASP18 | |
D | ARG27 | |
D | ARG54 | |
D | HIS59 | |
A | ARG27 | |
D | THR109 | |
D | GLY201 | |
D | GLY222 | |
E | ASN16 | |
E | ASP18 | |
E | ARG27 | |
E | ARG54 | |
E | HIS59 | |
E | THR109 | |
E | GLY201 | |
A | ARG54 | |
E | GLY222 | |
F | ASN16 | |
F | ASP18 | |
F | ARG27 | |
F | ARG54 | |
F | HIS59 | |
F | THR109 | |
F | GLY201 | |
F | GLY222 | |
G | ASN16 | |
A | HIS59 | |
G | ASP18 | |
G | ARG27 | |
G | ARG54 | |
G | HIS59 | |
G | THR109 | |
G | GLY201 | |
G | GLY222 | |
H | ASN16 | |
H | ASP18 | |
H | ARG27 | |
A | THR109 | |
H | ARG54 | |
H | HIS59 | |
H | THR109 | |
H | GLY201 | |
H | GLY222 | |
A | GLY201 | |
A | GLY222 | |
B | ASN16 |
site_id | SWS_FT_FI4 |
Number of Residues | 8 |
Details | SITE: Transition state stabilizer => ECO:0000255|HAMAP-Rule:MF_00279 |
Chain | Residue | Details |
A | GLU160 | |
B | GLU160 | |
C | GLU160 | |
D | GLU160 | |
E | GLU160 | |
F | GLU160 | |
G | GLU160 | |
H | GLU160 |