3EJM

Crystal structure of the mimivirus NDK +Kpn mutant complexed with GDP

Summary for 3EJM

Related2b8p
DescriptorNucleoside diphosphate kinase, GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ... (4 entities in total)
Functional Keywordsndk mimivirus phosphotransferase nucleotide binding, atp-binding, kinase, magnesium, metal-binding, nucleotide metabolism, nucleotide-binding, phosphoprotein, transferase
Biological sourceAcanthamoeba polyphaga mimivirus
Total number of polymer chains2
Total molecular weight34192.59
Authors
Jeudy, S.,Lartigue, A.,Claverie, J.M.,Abergel, C. (deposition date: 2008-09-18, release date: 2009-08-25, Last modification date: 2012-04-04)
Primary citation
Jeudy, S.,Lartigue, A.,Claverie, J.M.,Abergel, C.
Dissecting the unique nucleotide specificity of mimivirus nucleoside diphosphate kinase.
J.Virol., 83:7142-7150, 2009
PubMed: 19439473 (PDB entries with the same primary citation)
DOI: 10.1128/JVI.00511-09
MImport into Mendeley
Experimental method
X-RAY DIFFRACTION (1.95 Å)
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Structure validation

RfreeClashscoreRamachandran outliersSidechain outliersRSRZ outliers0.207404.6%3.4%MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution

More Asymmetric unit images

Molmil generated image of 3ejm
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Molmil generated image of 3ejm
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Molmil generated image of 3ejm
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More Biological unit images

Molmil generated image of 3ejm
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Molmil generated image of 3ejm
rotated about x axis by 90°
Molmil generated image of 3ejm
rotated about y axis by 90°
(*)In the case of coarse surface representation, the asymmetric unit is shown as red ribbon representation.
Coordinate files for Biological unit (3ejm.pdb1.gz [50.4 KB])
Coordinate files for Biological unit (3ejm.pdb2.gz [146.73 KB])