3EJM
Crystal structure of the mimivirus NDK +Kpn mutant complexed with GDP
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B (A, B) | Nucleoside diphosphate kinase | polymer | 146 | 16628.8 | 2 | UniProt (Q5UQL3) Pfam (PF00334) | Acanthamoeba polyphaga mimivirus | NDP kinase, NDK |
| 2 | C, E (A, B) | GUANOSINE-5'-DIPHOSPHATE | non-polymer | 443.2 | 2 | Chemie (GDP) PubChem (136073927) PubChem (135398619) PubChem (135402030) PubChem (135431654) PubChem (135566337) PubChem (135760556) PubChem (136026707) PubChem (136053418) PubChem (136663964) PubChem (136664748) PubChem (136759848) PubChem (136759849) PubChem (136759850) PubChem (136836636) PubChem (136847074) PubChem (172898537) | |||
| 3 | D, F (A, B) | MAGNESIUM ION | non-polymer | 24.3 | 2 | Chemie (MG) PubChem (888) | |||
| 4 | G, H (A, B) | water | water | 18.0 | 240 | Chemie (HOH) |
Sequence modifications
A, B: 2 - 141 (UniProt: Q5UQL3)
| PDB | External Database | Details |
|---|---|---|
| Tyr -4 | - | expression tag |
| Lys -3 | - | expression tag |
| Lys -2 | - | expression tag |
| Ala -1 | - | expression tag |
| Gly 0 | - | expression tag |
| Leu 1 | - | expression tag |
| Asn 91 | - | SEE REMARK 999 |
| Thr 92 | - | SEE REMARK 999 |
| Pro 94 | Ile 92 | SEE REMARK 999 |
| Ala 96 | - | SEE REMARK 999 |
| Ser 97 | - | SEE REMARK 999 |
| Ala 98 | Thr 94 | SEE REMARK 999 |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 2 |
| Total formula weight | 33257.6 | |
| Non-Polymers* | Number of molecules | 4 |
| Total formula weight | 935.0 | |
| All* | Total formula weight | 34192.6 |
