LpoA (YraM) C-domain from Haemophilus influenzae, a regulator of PBP1A

Replaces:  2H4A

Summary for 3CKM

Related5KCN 5VAT 5VBG
DescriptorYRAM (HI1655), SULFATE ION, BETA-MERCAPTOETHANOL, ... (4 entities in total)
Functional Keywordsyram, periplasmic-binding protein, lipoprotein, unliganded, biosynthetic protein, pbp1a, transpeptidase, peptidoglycan
Biological sourceHaemophilus influenzae
Cellular locationCell outer membrane ; Lipid- anchor ; Periplasmic side  P45299
Total number of polymer chains1
Total molecular weight36399.25
Vijayalakshmi, J.,Saper, M.A. (deposition date: 2008-03-16, release date: 2008-05-13, Last modification date: 2017-11-08)
Primary citation
Vijayalakshmi, J.,Akerley, B.J.,Saper, M.A.
Structure of YraM, a protein essential for growth of Haemophilus influenzae.
Proteins, 73:204-217, 2008
PubMed: 18412262 (PDB entries with the same primary citation)
DOI: 10.1002/prot.22033
MImport into Mendeley
Experimental method

Structure validation

RfreeClashscoreRamachandran outliersSidechain outliersRSRZ outliers 0.1896 0.3% 1.1% 7.6%MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution
Download full validation reportDownload
PDB entries from 2020-10-21