Crystal structure of Acanthamoeba polyphaga mimivirus nucleoside diphosphate kinase complexed with dGDP

Summary for 3B6B

DescriptorNucleoside diphosphate kinase, MAGNESIUM ION, 2'-DEOXYGUANOSINE-5'-DIPHOSPHATE, ... (4 entities in total)
Functional Keywordsndk, phosphotransferase, nucleotide binding protein, atp-binding, kinase, magnesium, metal-binding, nucleotide metabolism, nucleotide-binding, phosphorylation, transferase
Biological sourceAcanthamoeba polyphaga mimivirus (APMV)
Total number of polymer chains6
Total molecular weight111756.02
Jeudy, S.,Lartigue, A.,Claverie, J.M.,Abergel, C. (deposition date: 2007-10-28, release date: 2008-11-04, Last modification date: 2011-07-13)
Primary citation
Jeudy, S.,Lartigue, A.,Claverie, J.M.,Abergel, C.
Dissecting the unique nucleotide specificity of mimivirus nucleoside diphosphate kinase.
J.Virol., 83:7142-7150, 2009
PubMed: 19439473 (PDB entries with the same primary citation)
DOI: 10.1128/JVI.00511-09
MImport into Mendeley
Experimental method

Structure validation

RfreeClashscoreRamachandran outliersSidechain outliersRSRZ outliers0.229504.4%3.8%MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution