3B6B

Crystal structure of Acanthamoeba polyphaga mimivirus nucleoside diphosphate kinase complexed with dGDP

Entity

Entity ID	Chain ID	Description	Type	Chain length	Formula weight	Number of molecules	DB Name (Accession)	Biological source	Descriptive keywords
1	A, B, C, D, E... (A, B, C, D, E...)	Nucleoside diphosphate kinase	polymer	157	18174.5	6	UniProt (Q5UQL3) Pfam (PF00334)	Acanthamoeba polyphaga mimivirus (APMV)	NDK, NDP kinase
2	G, I, K, M, O... (A, B, C, D, E...)	MAGNESIUM ION	non-polymer		24.3	6	Chemie (MG)
3	H, J, L, N, P... (A, B, C, D, E...)	2'-DEOXYGUANOSINE-5'-DIPHOSPHATE	non-polymer		427.2	6	Chemie (DGI)
4	S, T, U, V, W... (A, B, C, D, E...)	water	water		18.0	327	Chemie (HOH)

Sequence modifications

A, B, C, D, E, F: 2 - 137 (UniProt: Q5UQL3)

PDB	External Database	Details
Ser -19	-	expression tag
Tyr -18	-	expression tag
Tyr -17	-	expression tag
His -16	-	expression tag
His -15	-	expression tag
His -14	-	expression tag
His -13	-	expression tag
His -12	-	expression tag
His -11	-	expression tag
Leu -10	-	expression tag
Glu -9	-	expression tag
Ser -8	-	expression tag
Thr -7	-	expression tag
Ser -6	-	expression tag
Leu -5	-	expression tag
Tyr -4	-	expression tag
Lys -3	-	expression tag
Lys -2	-	expression tag
Ala -1	-	expression tag
Gly 0	-	expression tag
Leu 1	-	expression tag

Contents of the asymmetric unit

Polymers	Number of chains	6
	Total formula weight	109047.0
Non-Polymers*	Number of molecules	12
	Total formula weight	2709.0
All*	Total formula weight	111756.0

*Water molecules are not included.