3J81

CryoEM structure of a partial yeast 48S preinitiation complex

Summary for 3J81

• Entry DOI: 10.2210/pdb3j81/pdb
• Related: 3J80
• EMDB information: 2763
• Descriptor: 18S rRNA, eS8, uS4, ... (45 entities in total)
• Functional Keywords: eukaryotic translation initiation, 48s, small ribosome subunit, ribosome
• Biological source: Saccharomyces cerevisiae (yeast); More
• Total number of polymer chains: 42
• Total formula weight: 1364522.89

Authors

Hussain, T.,Llacer, J.L.,Fernandez, I.S.,Savva, C.G.,Ramakrishnan, V. (deposition date: 2014-08-29, release date: 2014-11-05, Last modification date: 2024-02-21)

Primary citation

Hussain, T.,Llacer, J.L.,Fernandez, I.S.,Munoz, A.,Martin-Marcos, P.,Savva, C.G.,Lorsch, J.R.,Hinnebusch, A.G.,Ramakrishnan, V.
Structural changes enable start codon recognition by the eukaryotic translation initiation complex.
Cell(Cambridge,Mass.), 159:597-607, 2014

PubMed Abstract: During eukaryotic translation initiation, initiator tRNA does not insert fully into the P decoding site on the 40S ribosomal subunit. This conformation (POUT) is compatible with scanning mRNA for the AUG start codon. Base pairing with AUG is thought to promote isomerization to a more stable conformation (PIN) that arrests scanning and promotes dissociation of eIF1 from the 40S subunit. Here, we present a cryoEM reconstruction of a yeast preinitiation complex at 4.0 Å resolution with initiator tRNA in the PIN state, prior to eIF1 release. The structure reveals stabilization of the codon-anticodon duplex by the N-terminal tail of eIF1A, changes in the structure of eIF1 likely instrumental in its subsequent release, and changes in the conformation of eIF2. The mRNA traverses the entire mRNA cleft and makes connections to the regulatory domain of eIF2?, eIF1A, and ribosomal elements that allow recognition of context nucleotides surrounding the AUG codon.

PubMed: 25417110
DOI: 10.1016/j.cell.2014.10.001

Experimental method

ELECTRON MICROSCOPY (4 Å)