1WCD

Crystal structure of IBDV T1 virus-like particle reveals a missing link in icosahedral viruses evolution

Summary for 1WCD

Related1WCE
DescriptorMAJOR STRUCTURAL PROTEIN VP2 (2 entities in total)
Functional Keywordsvirus, non-enveloped icosahedral viruses, double-stranded rna virus protein, birnavirus, transcriptase machinery, hydrolase, membrane translocation activity, evolution, icosahedral virus
Biological sourceINFECTIOUS BURSAL DISEASE VIRUS (IBDV)
Cellular locationCapsid protein VP2: Virion (Potential). Capsid protein VP3: Virion (Potential). Structural peptide 1: Virion (Potential). Structural peptide 2: Virion (Potential). Structural peptide 3: Virion (Potential). Structural peptide 4: Virion (Potential) P15480
Total number of polymer chains1
Total molecular weight47192.11
Authors
Coulibaly, F.,Chevalier, C.,Gutsche, I.,Pous, J.,Bressanelli, S.,Navaza, J.,Delmas, B.,Rey, F.A. (deposition date: 2004-11-12, release date: 2005-04-05, Last modification date: 2011-07-13)
Primary citation
Coulibaly, F.,Chevalier, C.,Gutsche, I.,Pous, J.,Navaza, J.,Bressanelli, S.,Delmas, B.,Rey, F.A.
The Birnavirus Crystal Structure Reveals Structural Relationships Among Icosahedral Viruses.
Cell(Cambridge,Mass.), 120:761-, 2005
PubMed: 15797378 (PDB entries with the same primary citation)
DOI: 10.1016/J.CELL.2005.01.009
MImport into Mendeley
Experimental method
X-RAY DIFFRACTION (3 Å)
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Structure validation

ClashscoreRamachandran outliersSidechain outliersRSRZ outliers252.4%5.1%1.7%MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution

More Asymmetric unit images

Molmil generated image of 1wcd
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Molmil generated image of 1wcd
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Molmil generated image of 1wcd
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More Biological unit images

Molmil generated image of 1wcd
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Molmil generated image of 1wcd
rotated about x axis by 90°
Molmil generated image of 1wcd
rotated about y axis by 90°
(*)In the case of coarse surface representation, the asymmetric unit is shown as red ribbon representation.
Coordinate files for Biological unit (1wcd.pdb1.gz [3.72 MB])