1SKM

HhaI methyltransferase in complex with DNA containing an abasic south carbocyclic sugar at its target site

1SKM の概要

関連するPDBエントリー1HMY 1MHT 1FJX 9MHT
分子名称5'-D(*TP*CP*CP*AP*TP*GP*CP*GP*CP*TP*GP*AP*C)-3', 5'-D(*T*GP*TP*CP*AP*GP*(HCX)P*GP*CP*AP*TP*GP*G)-3', Modification methylase HhaI, ... (5 entities in total)
機能のキーワードprotein-dna complex containing constrained abasic unnatural base, transferase-dna complex, transferase/dna
由来する生物種Haemophilus haemolyticus
ポリマー鎖数3
分子量合計45246.74
構造登録者
Horton, J.R.,Ratner, G.,Banavali, N.,Huang, N.,Marquez, V.E.,MacKerell, A.D.,Cheng, X. (登録日: 2004-03-05, 公開日: 2004-08-24, 最終更新日: 2011-07-13)
主引用文献
Horton, J.R.,Ratner, G.,Banavali, N.K.,Huang, N.,Choi, Y.,Maier, M.A.,Marquez, V.E.,MacKerell, A.D.,Cheng, X.
Caught in the act: visualization of an intermediate in the DNA base-flipping pathway induced by HhaI methyltransferase
Nucleic Acids Res., 32:3877-3886, 2004
PubMed: 15273274 (主引用文献が同じPDBエントリー)
DOI: 10.1093/nar/gkh701
MImport into Mendeley
実験手法
X-RAY DIFFRACTION (2.2 Å)
NMR情報
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構造検証レポート

ClashscoreRamachandran outliersSidechain outliers90.3%2.2%MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution
検証レポート(詳細版)をダウンロード

他の静止画像(非対称単位)

Molmil generated image of 1skm
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Molmil generated image of 1skm
x軸(左右方向)周りに90°回転
Molmil generated image of 1skm
y軸(上下方向)周りに90°回転