1OYN

Crystal structure of PDE4D2 in complex with (R,S)-rolipram

Summary for 1OYN

• Entry DOI: 10.2210/pdb1oyn/pdb
• Related: 1OYM
• Descriptor: cAMP-specific phosphodiesterase PDE4D2, ZINC ION, ROLIPRAM, ... (4 entities in total)
• Functional Keywords: pde, camp, rolipram, hydrolase
• Biological source: Homo sapiens (human)
• Cellular location: Cytoplasm (By similarity): Q08499
• Total number of polymer chains: 4
• Total formula weight: 167203.74

Authors

Huai, Q.,Wang, H.,Sun, Y.,Kim, H.Y.,Liu, Y.,Ke, H. (deposition date: 2003-04-05, release date: 2003-07-15, Last modification date: 2024-02-14)

Primary citation

Huai, Q.,Wang, H.,Sun, Y.,Kim, H.Y.,Liu, Y.,Ke, H.
Three-dimensional structures of PDE4D in complex with roliprams and implication on inhibitor selectivity
Structure, 11:865-873, 2003

PubMed Abstract: Selective inhibitors against the 11 families of cyclic nucleotide phosphodiesterases (PDEs) are used to treat various human diseases. How the inhibitors selectively bind the conserved PDE catalytic domains is unknown. The crystal structures of the PDE4D2 catalytic domain in complex with (R)- or (R,S)-rolipram suggest that inhibitor selectivity is determined by the chemical nature of amino acids and subtle conformational changes of the binding pockets. The conformational states of Gln369 in PDE4D2 may play a key role in inhibitor recognition. The corresponding Y329S mutation in PDE7 may lead to loss of the hydrogen bonds between rolipram and Gln369 and is thus a possible reason explaining PDE7's insensitivity to rolipram inhibition. Docking of the PDE5 inhibitor sildenafil into the PDE4 catalytic pocket further helps understand inhibitor selectivity.

PubMed: 12842049
DOI: 10.1016/S0969-2126(03)00123-0

Experimental method

X-RAY DIFFRACTION (2 Å)