1NPD

X-RAY STRUCTURE OF SHIKIMATE DEHYDROGENASE COMPLEXED WITH NAD+ FROM E.COLI (YDIB) NORTHEAST STRUCTURAL GENOMICS RESEARCH CONSORTIUM (NESG) TARGET ER24

Summary for 1NPD

DescriptorHYPOTHETICAL SHIKIMATE 5-DEHYDROGENASE-LIKE PROTEIN YDIB, NICOTINAMIDE-ADENINE-DINUCLEOTIDE (3 entities in total)
Functional Keywordsstructural genomics, psi, protein structure initiative, northeast structural genomics consortium, nesg, unknown function
Biological sourceEscherichia coli
Total number of polymer chains2
Total molecular weight64874
Authors
Benach, J.,Kuzin, A.P.,Lee, I.,Rost, B.,Chiang, Y.,Acton, T.B.,Montelione, G.T.,Hunt, J.F.,Northeast Structural Genomics Consortium (NESG) (deposition date: 2003-01-17, release date: 2003-01-28, Last modification date: 2017-12-20)
Primary citation
Benach, J.,Lee, I.,Edstrom, W.,Kuzin, A.P.,Chiang, Y.,Acton, T.B.,Montelione, G.T.,Hunt, J.F.
The 2.3-A crystal structure of the shikimate 5-dehydrogenase orthologue YdiB from Escherichia coli suggests a novel catalytic environment for an NAD-dependent dehydrogenase
J.Biol.Chem., 278:19176-19182, 2003
PubMed: 12624088 (PDB entries with the same primary citation)
DOI: 10.1074/jbc.M301348200
MImport into Mendeley
Experimental method
X-RAY DIFFRACTION (2.3 Å)
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Structure validation

RfreeClashscoreRamachandran outliersSidechain outliersRSRZ outliers0.279191.2%3.3%5.1%MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution

More Asymmetric unit images

Molmil generated image of 1npd
no rotation
Molmil generated image of 1npd
rotated about x axis by 90°
Molmil generated image of 1npd
rotated about y axis by 90°
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