1NEL

FLUORIDE INHIBITION OF YEAST ENOLASE: CRYSTAL STRUCTURE OF THE ENOLASE-MG2+-F--PI COMPLEX AT 2.6-ANGSTROMS RESOLUTION

Summary for 1NEL

• Entry DOI: 10.2210/pdb1nel/pdb
• Descriptor: ENOLASE, MAGNESIUM ION, PHOSPHATE ION, ... (5 entities in total)
• Functional Keywords: carbon-oxygen lyase
• Biological source: Saccharomyces cerevisiae (baker's yeast)
• Cellular location: Cytoplasm : P00924
• Total number of polymer chains: 1
• Total formula weight: 46828.96

Authors

Lebioda, L.,Zhang, E.,Lewinski, K.,Brewer, M.J. (deposition date: 1993-08-20, release date: 1994-01-31, Last modification date: 2024-02-14)

Primary citation

Lebioda, L.,Zhang, E.,Lewinski, K.,Brewer, J.M.
Fluoride inhibition of yeast enolase: crystal structure of the enolase-Mg(2+)-F(-)-Pi complex at 2.6 A resolution.
Proteins, 16:219-225, 1993

PubMed Abstract: Enolase in the presence of its physiological cofactor Mg2+ is inhibited by fluoride and phosphate ions in a strongly cooperative manner (Nowak, T, Maurer, P. Biochemistry 20:6901, 1981). The structure of the quaternary complex yeast enolase-Mg(2+)-F(-)-Pi has been determined by X-ray diffraction and refined to an R = 16.9% for those data with F/sigma (F) > or = 3 to 2.6 A resolution with a good geometry of the model. The movable loops of Pro-35-Ala-45, Val-153-Phe-169, and Asp-255-Asn-266 are in the closed conformation found previously in the precatalytic substrate-enzyme complex. Calculations of molecular electrostatic potential show that this conformation stabilizes binding of negatively charged ligands at the Mg2+ ion more strongly than the open conformation observed in the native enolase. This closed conformation is complementary to the transition state, which also has a negatively charged ion, hydroxide, at Mg2+. The synergism of inhibition by F- and Pi most probably is due to the requirement of Pi for the closed conformation. It is possible that other Mg(2+)-dependent enzymes that have OH- ions bound to the metal ion in the transition state also will be inhibited by fluoride ions.

PubMed: 8346189
DOI: 10.1002/prot.340160302

Experimental method

X-RAY DIFFRACTION (2.6 Å)