1HM5

CRYSTAL STRUCTURE ANALYSIS OF THE RABBIT D-GLUCOSE 6-PHOSPHATE ISOMERASE (NO LIGAND BOUND)

Summary for 1HM5

• Entry DOI: 10.2210/pdb1hm5/pdb
• Related: 1DQR 1G98
• Descriptor: PHOSPHOGLUCOSE ISOMERASE (2 entities in total)
• Functional Keywords: dimer, isomerase
• Biological source: Oryctolagus cuniculus (rabbit)
• Cellular location: Cytoplasm: Q9N1E2
• Total number of polymer chains: 2
• Total formula weight: 125655.24

Authors

Arsenieva, D.A.,Jeffery, C.J.,Hardre, R.,Salmon, L. (deposition date: 2000-12-04, release date: 2002-09-27, Last modification date: 2023-08-09)

Primary citation

Arsenieva, D.A.,Jeffery, C.J.
Conformational Changes in Phosphoglucose Isomerase Induced by Ligand Binding
J.Mol.Biol., 323:77-84, 2002

PubMed Abstract: Phosphoglucose isomerase (PGI; EC 5.3.1.9) is the second enzyme in glycolysis, where it catalyzes the isomerization of D-glucose-6-phosphate to D-fructose-6-phosphate. It is the same protein as autocrine motility factor, differentiation and maturation mediator, and neuroleukin. Here, we report a new X-ray crystal structure of rabbit PGI (rPGI) without ligands bound in its active site. The structure was solved at 1.8A resolution by isomorphous phasing with a previously solved X-ray crystal structure of the rPGI dimer containing 6-phosphogluconate in its active site. Comparison of the new structure to previously reported structures enables identification of conformational changes that occur during binding of substrate or inhibitor molecules. Ligand binding causes an induced fit of regions containing amino acid residues 209-215, 245-259 and 385-389. This conformational change differs from the change previously reported to occur between the ring-opening and isomerization steps, in which the helix containing residues 513-521 moves toward the bound substrate. Differences between the liganded and unliganded structures are limited to the region within and close to the active-site pocket.

PubMed: 12368100
DOI: 10.1016/S0022-2836(02)00892-6

Experimental method

X-RAY DIFFRACTION (1.8 Å)