1C8D

CANINE PANLEUKOPENIA VIRUS EMPTY CAPSID STRUCTURE

Summary for 1C8D

Related1IJS 4DPV 2CAS 1FPV 1MVM 1C8E 1C8F 1C8G 1C8H
DescriptorCANINE PARVOVIRUS CAPSID, CALCIUM ION (2 entities in total)
Functional Keywordscapsid, canine parvovirus, strain d, empty capsid, a300d, icosahedral virus, virus
Biological sourceCanine parvovirus
Total number of polymer chains1
Total molecular weight64823.71
Authors
Rossmann, M.G.,Simpson, A.A. (deposition date: 2000-05-05, release date: 2000-08-09, Last modification date: 2017-10-04)
Primary citation
Simpson, A.A.,Chandrasekar, V.,Hebert, B.,Sullivan, G.M.,Rossmann, M.G.,Parrish, C.R.
Host range and variability of calcium binding by surface loops in the capsids of canine and feline parvoviruses.
J.Mol.Biol., 300:597-610, 2000
PubMed: 10884355 (PDB entries with the same primary citation)
DOI: 10.1006/jmbi.2000.3868
MImport into Mendeley
Experimental method
X-RAY DIFFRACTION (3 Å)
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Structure validation

ClashscoreRamachandran outliersSidechain outliers192.6%9.2%MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution

More Asymmetric unit images

Molmil generated image of 1c8d
no rotation
Molmil generated image of 1c8d
rotated about x axis by 90°
Molmil generated image of 1c8d
rotated about y axis by 90°

More Biological unit images

Molmil generated image of 1c8d
no rotation
Molmil generated image of 1c8d
rotated about x axis by 90°
Molmil generated image of 1c8d
rotated about y axis by 90°
(*)In the case of coarse surface representation, the asymmetric unit is shown as red ribbon representation.
Coordinate files for Biological unit (1c8d.pdb1.gz [5.06 MB])