9ZUF
EBV gB trimer with "deliDoP" mutations and I5350A2h (prefusion conformation) - Global refinement
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C (A, B, C) | EBV gB trimer with "deliDoP" mutations and I5350A2h | polymer | 910 | 101609.4 | 3 | UniProt (P03188) | human gammaherpesvirus 4 (Epstein-Barr virus) | gB |
| 2 | D (D) | alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 748.7 | 1 | In PDB | |||
| 3 | E (E) | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 586.5 | 1 | In PDB | |||
| 4 | F, G, H, I, J... (A, B, C) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 16 | Chemie (NAG) PubChem (24139) |
Sequence modifications
A, B, C: 1 - 108 (UniProt: P03188)
A, B, C: -891 - -633 (PDB: 9ZUF)
A, B, C: 116 - 192 (UniProt: P03188)
A, B, C: 199 - 401 (UniProt: P03188)
A, B, C: 453 - 663 (UniProt: P03188)
A, B, C: -891 - -633 (PDB: 9ZUF)
A, B, C: 116 - 192 (UniProt: P03188)
A, B, C: 199 - 401 (UniProt: P03188)
| PDB | External Database | Details |
|---|---|---|
| Ser 193 | - | linker |
| Thr 194 | - | linker |
| Thr 195 | - | linker |
| Gln 196 | - | linker |
| Thr 197 | - | linker |
| Thr 198 | - | linker |
| Pro 293 | Ala 293 | engineered mutation |
| PDB | External Database | Details |
|---|---|---|
| Gly 446 | - | linker |
| Ser 447 | - | linker |
| Pro 448 | - | linker |
| Pro 449 | - | linker |
| Gly 450 | - | linker |
| Ser 451 | - | linker |
| Pro 452 | - | linker |
| Cys 527 | Gln 527 | engineered mutation |
| Cys 634 | Glu 634 | engineered mutation |
| Leu 664 | - | expression tag |
| Pro 665 | - | expression tag |
| Phe 666 | - | expression tag |
| Ile 667 | - | expression tag |
| Ala 668 | - | expression tag |
| Gln 669 | - | expression tag |
| Arg 670 | - | expression tag |
| Ile 671 | - | expression tag |
| Ala 672 | - | expression tag |
| Ala 673 | - | expression tag |
| Ile 674 | - | expression tag |
| Glu 675 | - | expression tag |
| Lys 676 | - | expression tag |
| Arg 677 | - | expression tag |
| Ile 678 | - | expression tag |
| Asn 679 | - | expression tag |
| Glu 680 | - | expression tag |
| Ile 681 | - | expression tag |
| Glu 682 | - | expression tag |
| Arg 683 | - | expression tag |
| Arg 684 | - | expression tag |
| Ile 685 | - | expression tag |
| Ser 686 | - | expression tag |
| Gly 687 | - | expression tag |
| Ser 688 | - | expression tag |
| Gly 689 | - | expression tag |
| Ser 690 | - | expression tag |
| Gly 691 | - | expression tag |
| Gly 692 | - | expression tag |
| Ser 693 | - | expression tag |
| Gly 694 | - | expression tag |
| His 695 | - | expression tag |
| His 696 | - | expression tag |
| His 697 | - | expression tag |
| His 698 | - | expression tag |
| His 699 | - | expression tag |
| His 700 | - | expression tag |
| His 701 | - | expression tag |
| His 702 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 3 |
| Total formula weight | 304828.1 | |
| Branched | Number of molecules | 2 |
| Total formula weight | 1335.2 | |
| Non-Polymers* | Number of molecules | 16 |
| Total formula weight | 3539.3 | |
| All* | Total formula weight | 309702.6 |
