9VVO
cryo-EM structure of gastric proton pump bound to YK01
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | Sodium/potassium-transporting ATPase subunit alpha | polymer | 983 | 108767.1 | 1 | UniProt (A0A8D1T4M7) | Sus scrofa (pig) | |
| 2 | B (B) | Potassium-transporting ATPase subunit beta | polymer | 268 | 30374.7 | 1 | UniProt (P18434) Pfam (PF00287) | Sus scrofa (pig) | Gastric H(+)/K(+) ATPase subunit beta,Proton pump beta chain,gp60-90 |
| 3 | C, E, F, G, J (A, B) | 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE | non-polymer | 787.1 | 5 | Chemie (PCW) | |||
| 4 | D (A) | MAGNESIUM ION | non-polymer | 24.3 | 1 | Chemie (MG) PubChem (888) | |||
| 5 | H (A) | YK01-b | non-polymer | 347.5 | 1 | Chemie (A1MA7) | |||
| 6 | I (A) | BERYLLIUM TRIFLUORIDE ION | non-polymer | 66.0 | 1 | Chemie (BEF) | |||
| 7 | K, L, M (B) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 3 | Chemie (NAG) PubChem (24139) | |||
| 8 | N (B) | CHOLESTEROL | non-polymer | 386.7 | 1 | Chemie (CLR) PubChem (5997) | |||
| 9 | O, P (A, B) | water | water | 18.0 | 373 | Chemie (HOH) |
Sequence modifications
A: 51 - 1033 (UniProt: A0A8D1T4M7)
| PDB | External Database | Details |
|---|---|---|
| Ser 1005 | Gly 1005 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 2 |
| Total formula weight | 139141.8 | |
| Non-Polymers* | Number of molecules | 12 |
| Total formula weight | 5423.7 | |
| All* | Total formula weight | 144565.5 |
