9TG4
Structure of the YbjP lipoprotein bound to the AcrABZ-TolC efflux pump
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C (A, B, C) | Outer membrane protein TolC | polymer | 480 | 52623.7 | 3 | UniProt (P02930) Pfam (PF02321) | Escherichia coli | Multidrug efflux pump subunit TolC,Outer membrane factor TolC |
| 2 | D, E, F, G, H... (D, E, F, G, H...) | Multidrug efflux pump subunit AcrA | polymer | 397 | 42237.5 | 6 | UniProt (P0AE06) Pfam (PF25917) Pfam (PF25876) Pfam (PF25944) Pfam (PF25967) | Escherichia coli | AcrAB-TolC multidrug efflux pump subunit AcrA,Acridine resistance protein A |
| 3 | J, K, L (J, K, L) | Multidrug efflux pump subunit AcrB | polymer | 1049 | 113665.2 | 3 | UniProt (P31224) Pfam (PF00873) | Escherichia coli | AcrAB-TolC multidrug efflux pump subunit AcrB,Acridine resistance protein B |
| 4 | M, N, O (M, N, O) | Multidrug efflux pump accessory protein AcrZ | polymer | 49 | 5304.4 | 3 | UniProt (P0AAW9) Pfam (PF10766) | Escherichia coli | AcrAB-TolC multidrug efflux pump accessory protein AcrZ,Acridine resistance protein Z |
| 5 | P, Q, R (P, Q, R) | Uncharacterized lipoprotein YbjP | polymer | 160 | 18122.9 | 3 | UniProt (P75818) Pfam (PF12883) | Escherichia coli | |
| 6 | S, T, U (A, B, C) | CHLORIDE ION | non-polymer | 35.5 | 3 | Chemie (CL) PubChem (312) |
Sequence modifications
A, B, C: 1 - 471 (UniProt: P02930)
P, Q, R: 28 - 171 (UniProt: P75818)
| PDB | External Database | Details |
|---|---|---|
| Met 0 | - | initiating methionine |
| Asp 472 | - | expression tag |
| Tyr 473 | - | expression tag |
| Lys 474 | - | expression tag |
| Asp 475 | - | expression tag |
| Asp 476 | - | expression tag |
| Asp 477 | - | expression tag |
| Asp 478 | - | expression tag |
| Lys 479 | - | expression tag |
| PDB | External Database | Details |
|---|---|---|
| Met 27 | - | initiating methionine |
| Glu 172 | - | expression tag |
| Asn 173 | - | expression tag |
| Leu 174 | - | expression tag |
| Tyr 175 | - | expression tag |
| Phe 176 | - | expression tag |
| Gln 177 | - | expression tag |
| Ser 178 | - | expression tag |
| Leu 179 | - | expression tag |
| Glu 180 | - | expression tag |
| His 181 | - | expression tag |
| His 182 | - | expression tag |
| His 183 | - | expression tag |
| His 184 | - | expression tag |
| His 185 | - | expression tag |
| His 186 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 18 |
| Total formula weight | 822573.5 | |
| Non-Polymers* | Number of molecules | 3 |
| Total formula weight | 106.4 | |
| All* | Total formula weight | 822679.9 |
