9TG4
Structure of the YbjP lipoprotein bound to the AcrABZ-TolC efflux pump
This is a non-PDB format compatible entry.
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 630 |
| Details | Topological domain: {"description":"Periplasmic","evidences":[{"source":"PubMed","id":"18406332","evidenceCode":"ECO:0000305"},{"source":"PDB","id":"2VDD","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2VDE","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI2 |
| Number of Residues | 33 |
| Details | Transmembrane: {"description":"Beta stranded; Name=S1","evidences":[{"source":"PubMed","id":"18406332","evidenceCode":"ECO:0000305"},{"source":"PDB","id":"2VDD","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2VDE","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI3 |
| Number of Residues | 81 |
| Details | Topological domain: {"description":"Extracellular","evidences":[{"source":"PubMed","id":"18406332","evidenceCode":"ECO:0000305"},{"source":"PDB","id":"2VDD","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2VDE","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI4 |
| Number of Residues | 39 |
| Details | Transmembrane: {"description":"Beta stranded; Name=S2","evidences":[{"source":"PubMed","id":"18406332","evidenceCode":"ECO:0000305"},{"source":"PDB","id":"2VDD","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2VDE","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI5 |
| Number of Residues | 30 |
| Details | Transmembrane: {"description":"Beta stranded; Name=S4","evidences":[{"source":"PubMed","id":"18406332","evidenceCode":"ECO:0000305"},{"source":"PDB","id":"2VDD","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2VDE","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI6 |
| Number of Residues | 30 |
| Details | Transmembrane: {"description":"Beta stranded; Name=S5","evidences":[{"source":"PubMed","id":"18406332","evidenceCode":"ECO:0000305"},{"source":"PDB","id":"2VDD","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2VDE","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI7 |
| Number of Residues | 84 |
| Details | Region: {"description":"Disordered","evidences":[{"source":"SAM","id":"MobiDB-lite","evidenceCode":"ECO:0000256"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI8 |
| Number of Residues | 45 |
| Details | Compositional bias: {"description":"Polar residues","evidences":[{"source":"SAM","id":"MobiDB-lite","evidenceCode":"ECO:0000256"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI9 |
| Number of Residues | 444 |
| Details | Coiled coil: {} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI10 |
| Number of Residues | 372 |
| Details | Topological domain: {"description":"Cytoplasmic","evidences":[{"source":"PubMed","id":"15919996","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI11 |
| Number of Residues | 54 |
| Details | Transmembrane: {"description":"Helical; Name=1"} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI12 |
| Number of Residues | 1932 |
| Details | Topological domain: {"description":"Periplasmic","evidences":[{"source":"PubMed","id":"15919996","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI13 |
| Number of Residues | 57 |
| Details | Transmembrane: {"description":"Helical; Name=2"} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI14 |
| Number of Residues | 57 |
| Details | Transmembrane: {"description":"Helical; Name=3"} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI15 |
| Number of Residues | 63 |
| Details | Transmembrane: {"description":"Helical; Name=4"} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI16 |
| Number of Residues | 54 |
| Details | Transmembrane: {"description":"Helical; Name=5"} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI17 |
| Number of Residues | 72 |
| Details | Transmembrane: {"description":"Helical; Name=6"} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI18 |
| Number of Residues | 48 |
| Details | Transmembrane: {"description":"Helical; Name=7"} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI19 |
| Number of Residues | 48 |
| Details | Transmembrane: {"description":"Helical; Name=8"} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI20 |
| Number of Residues | 57 |
| Details | Transmembrane: {"description":"Helical; Name=9"} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI21 |
| Number of Residues | 54 |
| Details | Transmembrane: {"description":"Helical; Name=10"} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI22 |
| Number of Residues | 57 |
| Details | Transmembrane: {"description":"Helical; Name=11"} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI23 |
| Number of Residues | 57 |
| Details | Transmembrane: {"description":"Helical; Name=12"} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI24 |
| Number of Residues | 3 |
| Details | Binding site: {"evidences":[{"source":"PubMed","id":"19023693","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"2W1B","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI25 |
| Number of Residues | 18 |
| Details | Topological domain: {"description":"Periplasmic","evidences":[{"source":"PubMed","id":"24747401","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"4C48","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI26 |
| Number of Residues | 60 |
| Details | Transmembrane: {"description":"Helical","evidences":[{"source":"HAMAP-Rule","id":"MF_01484","evidenceCode":"ECO:0000255"}]} |
| Chain | Residue | Details |
