9T5C
Naked mole-rat 80S ribosome in post-translocation non-rotated state
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (B) | mRNA | polymer | 10 | 3108.9 | 1 | Heterocephalus glaber | ||
| 2 | B (L5) | 28S ribosomal RNA | polymer | 4731 | 1531040.8 | 1 | Heterocephalus glaber | ||
| 3 | C (L7) | 5S ribosomal RNA | polymer | 120 | 38691.9 | 1 | Heterocephalus glaber | ||
| 4 | D (L8) | 5.8S ribosomal RNA | polymer | 158 | 50795.0 | 1 | Heterocephalus glaber | ||
| 5 | E (LA) | Large ribosomal subunit protein uL2 | polymer | 257 | 28088.9 | 1 | UniProt (A0A0P6J3A4) | Heterocephalus glaber (naked mole-rat) | 60S ribosomal protein L8 |
| 6 | F (LC) | Large ribosomal subunit protein uL4 | polymer | 419 | 47259.9 | 1 | UniProt (Q9D8E6) Pfam (PF00573) Pfam (PF14374) | Heterocephalus glaber (naked mole-rat) | 60S ribosomal protein L4 |
| 7 | G (LD) | Large ribosomal subunit protein uL18 | polymer | 297 | 34464.8 | 1 | UniProt (P47962) Pfam (PF17144) Pfam (PF14204) | Heterocephalus glaber (naked mole-rat) | 60S ribosomal protein L5 |
| 8 | H (LE) | Large ribosomal subunit protein eL6 | polymer | 296 | 33593.9 | 1 | UniProt (P47911) Pfam (PF03868) Pfam (PF01159) | Heterocephalus glaber (naked mole-rat) | 60S ribosomal protein L6,TAX-responsive enhancer element-binding protein 107,TAXREB107 |
| 9 | I (LF) | Large ribosomal subunit protein uL30 | polymer | 270 | 31492.9 | 1 | UniProt (P14148) Pfam (PF08079) Pfam (PF00327) | Heterocephalus glaber (naked mole-rat) | 60S ribosomal protein L7 |
| 10 | J (LG) | Large ribosomal subunit protein eL8 | polymer | 266 | 30061.8 | 1 | UniProt (P62424) Pfam (PF01248) | Heterocephalus glaber (naked mole-rat) | 60S ribosomal protein L7a,PLA-X polypeptide,Surfeit locus protein 3 |
| 11 | K (LH) | Large ribosomal subunit protein uL6 | polymer | 192 | 21917.5 | 1 | UniProt (P51410) Pfam (PF00347) | Heterocephalus glaber (naked mole-rat) | 60S ribosomal protein L9 |
| 12 | L (LI) | 60S ribosomal protein L10 | polymer | 214 | 24657.1 | 1 | UniProt (A0AAX6QHL6) | Heterocephalus glaber (naked mole-rat) | |
| 13 | M (LJ) | Large ribosomal subunit protein uL5 | polymer | 178 | 20288.5 | 1 | UniProt (A0A0P6IWW8) | Heterocephalus glaber (naked mole-rat) | 60S ribosomal protein L11 |
| 14 | N (LL) | Large ribosomal subunit protein eL13 | polymer | 211 | 24364.7 | 1 | UniProt (P47963) Pfam (PF01294) | Heterocephalus glaber (naked mole-rat) | 60S ribosomal protein L13,A52 |
| 15 | O (LM) | Large ribosomal subunit protein eL14 | polymer | 217 | 23620.3 | 1 | UniProt (Q9CR57) Pfam (PF01929) | Heterocephalus glaber (naked mole-rat) | 60S ribosomal protein L14 |
| 16 | P (LN) | Ribosomal protein L15 | polymer | 204 | 24207.3 | 1 | UniProt (G5BFP9) Pfam (PF00827) | Heterocephalus glaber (naked mole-rat) | |
| 17 | Q (LO) | Large ribosomal subunit protein uL13 | polymer | 203 | 23519.4 | 1 | UniProt (P19253) Pfam (PF00572) | Heterocephalus glaber (naked mole-rat) | 60S ribosomal protein L13a,Transplantation antigen P198,Tum-P198 antigen |
| 18 | R (LP) | Large ribosomal subunit protein uL22 | polymer | 184 | 21421.2 | 1 | UniProt (A0A0P6JH89) | Heterocephalus glaber (naked mole-rat) | 60S ribosomal protein L17 |
| 19 | S (LQ) | Large ribosomal subunit protein eL18 | polymer | 188 | 21698.7 | 1 | UniProt (P35980) Pfam (PF17135) | Heterocephalus glaber (naked mole-rat) | 60S ribosomal protein L18 |
| 20 | T (LR) | Ribosomal protein L19 | polymer | 196 | 23535.3 | 1 | UniProt (G5BRW3) Pfam (PF01280) Pfam (PF25476) | Heterocephalus glaber (naked mole-rat) | |
| 21 | U (LS) | Large ribosomal subunit protein eL20 | polymer | 176 | 20778.5 | 1 | UniProt (P62717) Pfam (PF01775) | Heterocephalus glaber (naked mole-rat) | 60S ribosomal protein L18a |
| 22 | V (LT) | Large ribosomal subunit protein eL21 | polymer | 160 | 18624.0 | 1 | UniProt (O09167) Pfam (PF01157) | Heterocephalus glaber (naked mole-rat) | 60S ribosomal protein L21 |
| 23 | W (LU) | Large ribosomal subunit protein eL22 | polymer | 128 | 14785.0 | 1 | UniProt (A0A0N8ESF8) | Heterocephalus glaber (naked mole-rat) | 60S ribosomal protein L22 |
| 24 | X (LV) | Large ribosomal subunit protein uL14 | polymer | 140 | 14892.5 | 1 | UniProt (G5BK67) Pfam (PF00238) | Heterocephalus glaber (naked mole-rat) | 60S ribosomal protein L23 |
| 25 | Y (LW) | Large ribosomal subunit protein eL24 | polymer | 157 | 17825.1 | 1 | UniProt (G5C020) Pfam (PF01246) | Heterocephalus glaber (naked mole-rat) | 60S ribosomal protein L24 |
| 26 | Z (LX) | Large ribosomal subunit protein uL23 | polymer | 156 | 17740.2 | 1 | UniProt (Q24JY1) Pfam (PF03939) Pfam (PF00276) | Heterocephalus glaber (naked mole-rat) | 60S ribosomal protein L23a |
| 27 | AA (LY) | Large ribosomal subunit protein uL24 | polymer | 145 | 17303.4 | 1 | UniProt (G5B5G0) Pfam (PF16906) Pfam (PF00467) | Heterocephalus glaber (naked mole-rat) | 60S ribosomal protein L26 |
| 28 | BA (LZ) | 60S ribosomal protein L27 | polymer | 136 | 15835.8 | 1 | UniProt (G5BN91) Pfam (PF00467) Pfam (PF01777) | Heterocephalus glaber (naked mole-rat) | |
| 29 | CA (La) | Large ribosomal subunit protein uL15 | polymer | 148 | 16648.6 | 1 | UniProt (G5BUW4) Pfam (PF00828) | Heterocephalus glaber (naked mole-rat) | 60S ribosomal protein L27a |
| 30 | DA (Lb) | Large ribosomal subunit protein eL29 | polymer | 160 | 17635.2 | 1 | UniProt (P47915) Pfam (PF01779) | Heterocephalus glaber (naked mole-rat) | 60S ribosomal protein L29 |
| 31 | EA (Lc) | Large ribosomal subunit protein eL30 | polymer | 115 | 12805.1 | 1 | UniProt (Q3T0D5) Pfam (PF01248) | Heterocephalus glaber (naked mole-rat) | 60S ribosomal protein L30 |
| 32 | FA (Ld) | Large ribosomal subunit protein eL31 | polymer | 125 | 14494.9 | 1 | UniProt (A0A0N8ESF6) | Heterocephalus glaber (naked mole-rat) | 60S ribosomal protein L31 |
| 33 | GA (Le) | 60S ribosomal protein L32 | polymer | 135 | 15898.9 | 1 | UniProt (G5BYD8) Pfam (PF01655) | Heterocephalus glaber (naked mole-rat) | |
| 34 | HA (Lf) | Large ribosomal subunit protein eL33 | polymer | 110 | 12580.8 | 1 | UniProt (A0A0P6J939) | Heterocephalus glaber (naked mole-rat) | 60S ribosomal protein L35a |
| 35 | IA (Lg) | Large ribosomal subunit protein eL34 | polymer | 117 | 13325.0 | 1 | UniProt (Q9D1R9) Pfam (PF01199) | Heterocephalus glaber (naked mole-rat) | 60S ribosomal protein L34 |
| 36 | JA (Lh) | Large ribosomal subunit protein uL29 | polymer | 123 | 14595.7 | 1 | UniProt (Q6ZWV7) Pfam (PF00831) | Heterocephalus glaber (naked mole-rat) | 60S ribosomal protein L35 |
| 37 | KA (Li) | 60S ribosomal protein L36 | polymer | 105 | 12290.9 | 1 | UniProt (G5C0Q6) Pfam (PF01158) | Heterocephalus glaber (naked mole-rat) | |
| 38 | LA (Lj) | Ribosomal protein L37 | polymer | 97 | 11111.0 | 1 | UniProt (A0A0P6JT91) | Heterocephalus glaber (naked mole-rat) | |
| 39 | MA (Lk) | Large ribosomal subunit protein eL38 | polymer | 70 | 8224.9 | 1 | UniProt (Q9JJI8) Pfam (PF01781) | Heterocephalus glaber (naked mole-rat) | 60S ribosomal protein L38 |
| 40 | NA (Ll) | Large ribosomal subunit protein eL39 | polymer | 51 | 6426.8 | 1 | UniProt (A0AAX6NYH3) | Heterocephalus glaber (naked mole-rat) | 60S ribosomal protein L39 |
| 41 | OA (Lm) | Ubiquitin-ribosomal protein eL40 fusion protein | polymer | 128 | 14758.4 | 1 | UniProt (G5C5A6) Pfam (PF00240) Pfam (PF01020) | Heterocephalus glaber (naked mole-rat) | Ubiquitin A-52 residue ribosomal protein fusion product 1 |
| 42 | PA (Ln) | 60S ribosomal protein L41 | polymer | 25 | 3473.5 | 1 | UniProt (A0A0P6J950) | Heterocephalus glaber (naked mole-rat) | |
| 43 | QA (Lo) | 60S ribosomal protein L36a | polymer | 106 | 12477.0 | 1 | UniProt (G5BW65) Pfam (PF00935) | Heterocephalus glaber (naked mole-rat) | 60S ribosomal protein L36a-like |
| 44 | RA (Lp) | Large ribosomal subunit protein eL43 | polymer | 92 | 10299.4 | 1 | UniProt (E3VX70) Pfam (PF01780) | Heterocephalus glaber (naked mole-rat) | 60S ribosomal protein L37a |
| 45 | SA (Lr) | Large ribosomal subunit protein eL28 | polymer | 137 | 15770.6 | 1 | UniProt (P41105) Pfam (PF01778) | Heterocephalus glaber (naked mole-rat) | 60S ribosomal protein L28 |
| 46 | TA (S2) | 18S ribosomal RNA | polymer | 1870 | 603062.9 | 1 | Heterocephalus glaber | ||
| 47 | UA (S6) | tRNA | polymer | 75 | 24128.4 | 1 | Heterocephalus glaber | ||
| 48 | VA (S7) | tRNA | polymer | 75 | 24082.3 | 1 | Heterocephalus glaber | ||
| 49 | WA (SA) | Small ribosomal subunit protein uS2 | polymer | 295 | 32867.9 | 1 | UniProt (P14206) Pfam (PF00318) Pfam (PF16122) | Heterocephalus glaber (naked mole-rat) | 37 kDa laminin receptor precursor,37LRP,37 kDa oncofetal antigen,37/67 kDa laminin receptor,LRP/LR,40S ribosomal protein SA,67 kDa laminin receptor,67LR,Laminin receptor 1,LamR,Laminin-binding protein precursor p40,LBP/p40,OFA/iLRP |
| 50 | XA (SB) | Small ribosomal subunit protein eS1 | polymer | 264 | 29942.0 | 1 | UniProt (P97351) Pfam (PF01015) | Heterocephalus glaber (naked mole-rat) | 40S ribosomal protein S3a,Protein TU-11 |
| 51 | YA (SC) | Small ribosomal subunit protein uS5 | polymer | 293 | 31283.4 | 1 | UniProt (P25444) Pfam (PF00333) Pfam (PF03719) | Heterocephalus glaber (naked mole-rat) | 40S ribosomal protein S2,40S ribosomal protein S4,Protein LLRep3 |
| 52 | ZA (SD) | Small ribosomal subunit protein uS3 | polymer | 243 | 26715.3 | 1 | UniProt (E2RH47) Pfam (PF07650) Pfam (PF00189) | Heterocephalus glaber (naked mole-rat) | 40S ribosomal protein S3 |
| 53 | AB (SE) | Small ribosomal subunit protein eS4 | polymer | 263 | 29654.9 | 1 | UniProt (Q76N24) | Heterocephalus glaber (naked mole-rat) | 40S ribosomal protein S4,X isoform |
| 54 | BB (SF) | Small ribosomal subunit protein uS7 | polymer | 204 | 22913.5 | 1 | UniProt (P97461) Pfam (PF00177) | Heterocephalus glaber (naked mole-rat) | 40S ribosomal protein S5 |
| 55 | CB (SG) | 40S ribosomal protein S6 | polymer | 249 | 28751.9 | 1 | UniProt (A0A0P6J125) | Heterocephalus glaber (naked mole-rat) | |
| 56 | DB (SH) | 40S ribosomal protein S7 | polymer | 194 | 22168.9 | 1 | UniProt (G5C7L2) Pfam (PF01251) | Heterocephalus glaber (naked mole-rat) | |
| 57 | EB (SI) | Small ribosomal subunit protein eS8 | polymer | 208 | 24263.4 | 1 | UniProt (Q5E958) Pfam (PF01201) | Heterocephalus glaber (naked mole-rat) | 40S ribosomal protein S8 |
| 58 | FB (SJ) | Small ribosomal subunit protein uS4 | polymer | 194 | 22607.5 | 1 | UniProt (G5CBG2) Pfam (PF00163) Pfam (PF01479) | Heterocephalus glaber (naked mole-rat) | 40S ribosomal protein S9 |
| 59 | GB (SK) | Small ribosomal subunit protein eS10 | polymer | 165 | 18951.8 | 1 | UniProt (P63325) Pfam (PF03501) | Heterocephalus glaber (naked mole-rat) | 40S ribosomal protein S10 |
| 60 | HB (SL) | Small ribosomal subunit protein uS17 | polymer | 158 | 18468.8 | 1 | UniProt (A0A0P6J0Q6) | Heterocephalus glaber (naked mole-rat) | 40S ribosomal protein S11 |
| 61 | IB (SN) | Small ribosomal subunit protein uS15 | polymer | 151 | 17259.4 | 1 | UniProt (G5B0I4) Pfam (PF08069) Pfam (PF00312) | Heterocephalus glaber (naked mole-rat) | 40S ribosomal protein S13 |
| 62 | JB (SO) | Small ribosomal subunit protein uS11 | polymer | 151 | 16302.8 | 1 | UniProt (P62265) | Heterocephalus glaber (naked mole-rat) | 40S ribosomal protein S14 |
| 63 | KB (SP) | 40S ribosomal protein S15 | polymer | 145 | 17076.2 | 1 | UniProt (G5AZL1) Pfam (PF00203) | Heterocephalus glaber (naked mole-rat) | RIG protein |
| 64 | LB (SQ) | Small ribosomal subunit protein uS9 | polymer | 146 | 16477.4 | 1 | UniProt (G5BJD7) Pfam (PF00380) | Heterocephalus glaber (naked mole-rat) | 40S ribosomal protein S16 |
| 65 | MB (SR) | Small ribosomal subunit protein eS17 | polymer | 135 | 15552.1 | 1 | UniProt (G5B1R5) Pfam (PF00833) | Heterocephalus glaber (naked mole-rat) | 40S ribosomal protein S17 |
| 66 | NB (SS) | Small ribosomal subunit protein uS13 | polymer | 152 | 17759.8 | 1 | UniProt (A0A0N8ESM4) | Heterocephalus glaber (naked mole-rat) | 40S ribosomal protein S18 |
| 67 | OB (ST) | Small ribosomal subunit protein eS19 | polymer | 145 | 16117.6 | 1 | UniProt (Q9CZX8) Pfam (PF01090) | Heterocephalus glaber (naked mole-rat) | 40S ribosomal protein S19 |
| 68 | PB (SU) | Small ribosomal subunit protein uS10 | polymer | 119 | 13331.8 | 1 | UniProt (G5B335) Pfam (PF00338) | Heterocephalus glaber (naked mole-rat) | 40S ribosomal protein S20 |
| 69 | QB (SV) | Small ribosomal subunit protein eS21 | polymer | 83 | 9169.4 | 1 | UniProt (Q9CQR2) Pfam (PF01249) | Heterocephalus glaber (naked mole-rat) | 40S ribosomal protein S21 |
| 70 | RB (SW) | Small ribosomal subunit protein uS8 | polymer | 130 | 14865.6 | 1 | UniProt (G5AY31) Pfam (PF00410) | Heterocephalus glaber (naked mole-rat) | 40S ribosomal protein S15a |
| 71 | SB (SX) | Small ribosomal subunit protein uS12 | polymer | 143 | 15863.7 | 1 | UniProt (A0A0P6J0V6) | Heterocephalus glaber (naked mole-rat) | 40S ribosomal protein S23 |
| 72 | TB (SY) | 40S ribosomal protein S24 | polymer | 133 | 15449.3 | 1 | UniProt (A0AAX6PA11) | Heterocephalus glaber (naked mole-rat) | |
| 73 | UB (SZ) | Small ribosomal subunit protein eS25 | polymer | 125 | 13776.2 | 1 | UniProt (Q56JX5) Pfam (PF03297) | Heterocephalus glaber (naked mole-rat) | 40S ribosomal protein S25 |
| 74 | VB (Sa) | 40S ribosomal protein S26 | polymer | 115 | 13063.5 | 1 | UniProt (E3VX72) | Heterocephalus glaber (naked mole-rat) | |
| 75 | WB (Sb) | 40S ribosomal protein S27 | polymer | 84 | 9480.2 | 1 | UniProt (E3VX74) Pfam (PF01667) | Heterocephalus glaber (naked mole-rat) | |
| 76 | XB (Sc) | Small ribosomal subunit protein eS28 | polymer | 69 | 7855.1 | 1 | UniProt (Q56JX6) Pfam (PF01200) | Heterocephalus glaber (naked mole-rat) | 40S ribosomal protein S28 |
| 77 | YB (Sd) | Small ribosomal subunit protein uS14 | polymer | 56 | 6690.8 | 1 | UniProt (A0A0P6JEN2) | Heterocephalus glaber (naked mole-rat) | 40S ribosomal protein S29 |
| 78 | ZB (Se) | Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein | polymer | 133 | 14441.7 | 1 | UniProt (P62862) Pfam (PF00240) Pfam (PF04758) | Heterocephalus glaber (naked mole-rat) | FAU ubiquitin-like and ribosomal protein S30 |
| 79 | AC (Sg) | Small ribosomal subunit protein RACK1 | polymer | 317 | 35115.7 | 1 | UniProt (A0A0P6J231) | Heterocephalus glaber (naked mole-rat) | Receptor for activated C kinase,Receptor of activated protein C kinase 1,Receptor of activated protein kinase C 1 |
| 80 | BC (LB) | Large ribosomal subunit protein uL3 | polymer | 403 | 46212.1 | 1 | UniProt (P27659) Pfam (PF00297) | Heterocephalus glaber (naked mole-rat) | 60S ribosomal protein L3,J1 protein |
| 81 | AD, AE, AF, AG, AH... (L5, L8, S2, B, LI...) | MAGNESIUM ION | non-polymer | 24.3 | 328 | Chemie (MG) PubChem (888) | |||
| 82 | IL, JL, TO (Lg, Lp, Sa) | ZINC ION | non-polymer | 65.4 | 3 | Chemie (ZN) PubChem (32051) | |||
| 83 | VO, WO, XO (L5, La, S2) | water | water | 18.0 | 6 | Chemie (HOH) |
Sequence modifications
LP: 1 - 184 (UniProt: A0A0P6JH89)
SJ: 1 - 194 (UniProt: G5CBG2)
SU: 1 - 119 (UniProt: G5B335)
SV: 1 - 83 (UniProt: Q9CQR2)
SX: 1 - 143 (UniProt: A0A0P6J0V6)
SY: 1 - 133 (UniProt: A0AAX6PA11)
| PDB | External Database | Details |
|---|---|---|
| Asp 40 | His 40 | conflict |
| PDB | External Database | Details |
|---|---|---|
| Leu 115 | Phe 115 | conflict |
| PDB | External Database | Details |
|---|---|---|
| Cys 18 | His 18 | conflict |
| Leu 19 | Arg 19 | conflict |
| Ile 23 | Thr 23 | conflict |
| PDB | External Database | Details |
|---|---|---|
| Ile 79 | Val 79 | conflict |
| Asp 82 | Asn 82 | conflict |
| PDB | External Database | Details |
|---|---|---|
| Arg 23 | His 23 | conflict |
| PDB | External Database | Details |
|---|---|---|
| Gln 10 | Arg 10 | conflict |
| Lys 15 | Asn 15 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 80 |
| Total formula weight | 3700153.0 | |
| Non-Polymers* | Number of molecules | 331 |
| Total formula weight | 8168.3 | |
| All* | Total formula weight | 3708321.2 |
