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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

9T5C

Naked mole-rat 80S ribosome in post-translocation non-rotated state

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(B)		mRNApolymer103108.91Heterocephalus glaber (naked mole-rat)
2B
(L5)		28S ribosomal RNApolymer47311531040.81Heterocephalus glaber (naked mole-rat)
3C
(L7)		5S ribosomal RNApolymer12038691.91Heterocephalus glaber (naked mole-rat)
4D
(L8)		5.8S ribosomal RNApolymer15850795.01Heterocephalus glaber (naked mole-rat)
5E
(LA)		Large ribosomal subunit protein uL2polymer25728088.91UniProt (A0A0P6J3A4)Heterocephalus glaber (naked mole-rat)60S ribosomal protein L8
6F
(LC)		Large ribosomal subunit protein uL4polymer41947259.91Heterocephalus glaber (naked mole-rat)
7G
(LD)		Large ribosomal subunit protein uL18polymer29734464.81UniProt (A0AAX6P0W2)Heterocephalus glaber (naked mole-rat)60S ribosomal protein L5
8H
(LE)		Large ribosomal subunit protein eL6polymer29633593.91Heterocephalus glaber (naked mole-rat)
9I
(LF)		Large ribosomal subunit protein uL30polymer27031492.91Heterocephalus glaber (naked mole-rat)
10J
(LG)		60S ribosomal protein L7apolymer26630061.81UniProt (A0A0P6K8Y4)Heterocephalus glaber (naked mole-rat)
11K
(LH)		Large ribosomal subunit protein uL6polymer19221917.51UniProt (G5C3U8)
Pfam (PF00347)		Heterocephalus glaber (naked mole-rat)60S ribosomal protein L9
12L
(LI)		60S ribosomal protein L10polymer21424657.11UniProt (A0AAX6QHL6)Heterocephalus glaber (naked mole-rat)
13M
(LJ)		Large ribosomal subunit protein uL5polymer17820288.51UniProt (A0A0P6IWW8)Heterocephalus glaber (naked mole-rat)60S ribosomal protein L11
14N
(LL)		60S ribosomal protein L13polymer21124364.71UniProt (A0AAX6P3F5)Heterocephalus glaber (naked mole-rat)
15O
(LM)		Large ribosomal subunit protein eL14polymer21723620.31Heterocephalus glaber (naked mole-rat)
16P
(LN)		60S ribosomal protein L15polymer20424207.31UniProt (A0AAX6PQU7)Heterocephalus glaber (naked mole-rat)
17Q
(LO)		60S ribosomal protein L13a isoform X1polymer20323519.41UniProt (A0AAX6Q4S4)Heterocephalus glaber (naked mole-rat)
18R
(LP)		Large ribosomal subunit protein uL22polymer18421421.21UniProt (A0A0P6JH89)Heterocephalus glaber (naked mole-rat)60S ribosomal protein L17
19S
(LQ)		60S ribosomal protein L18polymer18821698.71UniProt (G5B890)
Pfam (PF17135)		Heterocephalus glaber (naked mole-rat)
20T
(LR)		Ribosomal protein L19polymer19623535.31UniProt (G5BRW3)
Pfam (PF01280)
Pfam (PF25476)		Heterocephalus glaber (naked mole-rat)
21U
(LS)		Large ribosomal subunit protein eL20polymer17620778.51UniProt (A0A0P6JCV6)Heterocephalus glaber (naked mole-rat)60S ribosomal protein L18a
22V
(LT)		Large ribosomal subunit protein eL21polymer16018624.01UniProt (G5ATV5)
Pfam (PF01157)		Heterocephalus glaber (naked mole-rat)60S ribosomal protein L21
23W
(LU)		Large ribosomal subunit protein eL22polymer12814785.01UniProt (A0A0N8ESF8)Heterocephalus glaber (naked mole-rat)60S ribosomal protein L22
24X
(LV)		60S ribosomal protein L23polymer14014892.51UniProt (A0AAX6PVG0)Heterocephalus glaber (naked mole-rat)
25Y
(LW)		60S ribosomal protein L24polymer15717825.11UniProt (A0AAX6PSU9)Heterocephalus glaber (naked mole-rat)
26Z
(LX)		Large ribosomal subunit protein uL23polymer15617740.21UniProt (A0AAX6PQW7)Heterocephalus glaber (naked mole-rat)60S ribosomal protein L23a
27AA
(LY)		60S ribosomal protein L26polymer14517303.41UniProt (A0AAX6PRM3)Heterocephalus glaber (naked mole-rat)
28BA
(LZ)		60S ribosomal protein L27polymer13615835.81UniProt (G5BN91)
Pfam (PF00467)
Pfam (PF01777)		Heterocephalus glaber (naked mole-rat)
29CA
(La)		60S ribosomal protein L27apolymer14816648.61UniProt (A0AAX6PG51)Heterocephalus glaber (naked mole-rat)
30DA
(Lb)		Large ribosomal subunit protein eL29polymer16017635.21Heterocephalus glaber (naked mole-rat)
31EA
(Lc)		Large ribosomal subunit protein eL30polymer11512805.11UniProt (G5BJ16)
Pfam (PF01248)		Heterocephalus glaber (naked mole-rat)60S ribosomal protein L30
32FA
(Ld)		Large ribosomal subunit protein eL31polymer12514494.91UniProt (A0A0N8ESF6)Heterocephalus glaber (naked mole-rat)60S ribosomal protein L31
33GA
(Le)		60S ribosomal protein L32polymer13515898.91UniProt (A0AAX6QD41)Heterocephalus glaber (naked mole-rat)
34HA
(Lf)		Large ribosomal subunit protein eL33polymer11012580.81UniProt (A0A0P6J939)Heterocephalus glaber (naked mole-rat)60S ribosomal protein L35a
35IA
(Lg)		60S ribosomal protein L34polymer11713325.01UniProt (A0AAX6Q439)Heterocephalus glaber (naked mole-rat)
36JA
(Lh)		Large ribosomal subunit protein uL29polymer12314595.71UniProt (A0AAX6PDT5)Heterocephalus glaber (naked mole-rat)60S ribosomal protein L35
37KA
(Li)		60S ribosomal protein L36polymer10512290.91UniProt (A0AAX6Q2T6)Heterocephalus glaber (naked mole-rat)
38LA
(Lj)		Ribosomal protein L37polymer9711111.01UniProt (A0A0P6JT91)Heterocephalus glaber (naked mole-rat)
39MA
(Lk)		Large ribosomal subunit protein eL38polymer708224.91UniProt (A0A0P6IYP5)Heterocephalus glaber (naked mole-rat)60S ribosomal protein L38
40NA
(Ll)		Large ribosomal subunit protein eL39polymer516426.81UniProt (A0AAX6NYH3)Heterocephalus glaber (naked mole-rat)60S ribosomal protein L39
41OA
(Lm)		Ubiquitin-ribosomal protein eL40 fusion proteinpolymer12814758.41UniProt (G5C5A6)
Pfam (PF00240)
Pfam (PF01020)		Heterocephalus glaber (naked mole-rat)Ubiquitin A-52 residue ribosomal protein fusion product 1
42PA
(Ln)		60S ribosomal protein L41polymer253473.51UniProt (A0A0P6J950)Heterocephalus glaber (naked mole-rat)
43QA
(Lo)		60S ribosomal protein L36apolymer10612477.01UniProt (G5BW65)
Pfam (PF00935)		Heterocephalus glaber (naked mole-rat)
44RA
(Lp)		60S ribosomal protein L37apolymer9210299.41UniProt (A0AAX6NNU1)Heterocephalus glaber (naked mole-rat)
45SA
(Lr)		Large ribosomal subunit protein eL28polymer13715770.61UniProt (G5BVZ2)
Pfam (PF01778)		Heterocephalus glaber (naked mole-rat)60S ribosomal protein L28
46TA
(S2)		18S ribosomal RNApolymer1870603062.91Heterocephalus glaber (naked mole-rat)
47UA
(S6)		tRNApolymer7524128.41Heterocephalus glaber (naked mole-rat)
48VA
(S7)		tRNApolymer7524082.31Heterocephalus glaber (naked mole-rat)
49WA
(SA)		Small ribosomal subunit protein uS2polymer29532867.91UniProt (A0A0P6K1L6)Heterocephalus glaber (naked mole-rat)37 kDa laminin receptor precursor,37LRP,37/67 kDa laminin receptor,LRP/LR,67 kDa laminin receptor,67LR,Laminin receptor 1,LamR,Laminin-binding protein precursor p40,LBP/p40
50XA
(SB)		Small ribosomal subunit protein eS1polymer26429942.01UniProt (G5C1K3)
Pfam (PF01015)		Heterocephalus glaber (naked mole-rat)
51YA
(SC)		Small ribosomal subunit protein uS5polymer29331283.41UniProt (A0AAX6QEX7)Heterocephalus glaber (naked mole-rat)40S ribosomal protein S2
52ZA
(SD)		Small ribosomal subunit protein uS3polymer24326715.31UniProt (G5AS76)
Pfam (PF07650)
Pfam (PF00189)		Heterocephalus glaber (naked mole-rat)40S ribosomal protein S3
53AB
(SE)		40S ribosomal protein S4polymer26329654.91UniProt (A0A0P6JF61)Heterocephalus glaber (naked mole-rat)
54BB
(SF)		Small ribosomal subunit protein uS7polymer20422913.51UniProt (G5B7K7)
Pfam (PF00177)		Heterocephalus glaber (naked mole-rat)40S ribosomal protein S5
55CB
(SG)		40S ribosomal protein S6polymer24928751.91UniProt (A0A0P6J125)Heterocephalus glaber (naked mole-rat)
56DB
(SH)		40S ribosomal protein S7polymer19422168.91UniProt (A0AAX6NNW6)Heterocephalus glaber (naked mole-rat)
57EB
(SI)		40S ribosomal protein S8polymer20824263.41UniProt (G5ARV4)
Pfam (PF01201)		Heterocephalus glaber (naked mole-rat)
58FB
(SJ)		40S ribosomal protein S9polymer19422607.51UniProt (A0AAX6Q606)Heterocephalus glaber (naked mole-rat)
59GB
(SK)		Small ribosomal subunit protein eS10polymer16518951.81UniProt (A0A0P6IZJ7)Heterocephalus glaber (naked mole-rat)40S ribosomal protein S10
60HB
(SL)		Small ribosomal subunit protein uS17polymer15818468.81UniProt (A0A0P6J0Q6)Heterocephalus glaber (naked mole-rat)40S ribosomal protein S11
61IB
(SN)		40S ribosomal protein S13polymer15117259.41UniProt (A0AAX6PGK5)Heterocephalus glaber (naked mole-rat)
62JB
(SO)		Small ribosomal subunit protein uS11polymer15116302.81UniProt (A0A0N8ESF7)Heterocephalus glaber (naked mole-rat)40S ribosomal protein S14
63KB
(SP)		40S ribosomal protein S15polymer14517076.21UniProt (A0AAX6Q6L0)Heterocephalus glaber (naked mole-rat)
64LB
(SQ)		40S ribosomal protein S16polymer14616477.41UniProt (A0AAX6PUA9)Heterocephalus glaber (naked mole-rat)
65MB
(SR)		40S ribosomal protein S17polymer13515552.11UniProt (A0AAX6PIW5)Heterocephalus glaber (naked mole-rat)
66NB
(SS)		40S ribosomal protein S18polymer15217759.81UniProt (A0AAX6PA22)Heterocephalus glaber (naked mole-rat)
67OB
(ST)		40S ribosomal protein S19polymer14516117.61UniProt (A0AAX6QEV3)Heterocephalus glaber (naked mole-rat)
68PB
(SU)		40S ribosomal protein S20polymer11913331.81UniProt (A0AAX6QEN2)Heterocephalus glaber (naked mole-rat)
69QB
(SV)		40S ribosomal protein S21polymer839169.41UniProt (G5C8F1)
Pfam (PF01249)		Heterocephalus glaber (naked mole-rat)
70RB
(SW)		40S ribosomal protein S15a isoform X1polymer13014865.61UniProt (A0AAX6PNI7)Heterocephalus glaber (naked mole-rat)
71SB
(SX)		40S ribosomal protein S23polymer14315863.71UniProt (A0AAX6P1S3)Heterocephalus glaber (naked mole-rat)
72TB
(SY)		40S ribosomal protein S24polymer13315449.31UniProt (A0AAX6PA11)Heterocephalus glaber (naked mole-rat)
73UB
(SZ)		40S ribosomal protein S25polymer12513776.21UniProt (A0AAX6PPX8)Heterocephalus glaber (naked mole-rat)
74VB
(Sa)		40S ribosomal protein S26polymer11513063.51UniProt (A0AAX6NNU4)Heterocephalus glaber (naked mole-rat)
75WB
(Sb)		40S ribosomal protein S27polymer849480.21UniProt (A0AAX6NNV5)Heterocephalus glaber (naked mole-rat)
76XB
(Sc)		Small ribosomal subunit protein eS28polymer697855.11UniProt (G5B4M2)
Pfam (PF01200)		Heterocephalus glaber (naked mole-rat)40S ribosomal protein S28
77YB
(Sd)		40S ribosomal protein S29polymer566690.81UniProt (A0AAX6NS13)Heterocephalus glaber (naked mole-rat)
78ZB
(Se)		Ubiquitin-like protein fubi and ribosomal protein S30polymer13314441.71UniProt (A0AAX6PHM7)Heterocephalus glaber (naked mole-rat)
79AC
(Sg)		Small ribosomal subunit protein RACK1polymer31735115.71UniProt (A0A0P6J231)Heterocephalus glaber (naked mole-rat)Receptor for activated C kinase,Receptor of activated protein C kinase 1,Receptor of activated protein kinase C 1
80BC
(LB)		Large ribosomal subunit protein uL3polymer40346212.11UniProt (A0A0P6IYN5)Heterocephalus glaber (naked mole-rat)60S ribosomal protein L3
81AD, AE, AF, AG, AH...
(L5, L8, S2, B, LI...)		MAGNESIUM IONnon-polymer24.3328Chemie (MG)
PubChem (888)
82IL, JL, TO
(Lg, Lp, Sa)		ZINC IONnon-polymer65.43Chemie (ZN)
PubChem (32051)
83VO, WO, XO
(L5, La, S2)		waterwater18.06Chemie (HOH)
Sequence modifications
LD: 1 - 297 (UniProt: A0AAX6P0W2)
PDBExternal DatabaseDetails
Arg 19Lys 19conflict
Asn 126Thr 126conflict
Gly 128Asp 128conflict
Asn 191Ser 191conflict
LG: 1 - 266 (UniProt: A0A0P6K8Y4)
PDBExternal DatabaseDetails
Ala 24Thr 24conflict
Lys 131Arg 131conflict
LH: 1 - 192 (UniProt: G5C3U8)
PDBExternal DatabaseDetails
Glu 14Lys 14conflict
Glu 17Asp 17conflict
Thr 130Ala 130conflict
Ala 190Pro 190conflict
LL: 1 - 211 (UniProt: A0AAX6P3F5)
PDBExternal DatabaseDetails
Gln 20Arg 20conflict
Asp 23Ala 23conflict
Val 168Ile 168conflict
LO: 1 - 203 (UniProt: A0AAX6Q4S4)
PDBExternal DatabaseDetails
Glu 100Asp 100conflict
Leu 105Phe 105conflict
Met 166Ile 166conflict
Leu 175Met 175conflict
Cys 190Ser 190conflict
Asn 199His 199conflict
LP: 1 - 184 (UniProt: A0A0P6JH89)
PDBExternal DatabaseDetails
Asp 40His 40conflict
LQ: 1 - 188 (UniProt: G5B890)
PDBExternal DatabaseDetails
Ile 92Val 92conflict
Glu 129Asp 129conflict
Arg 134His 134conflict
LS: 1 - 176 (UniProt: A0A0P6JCV6)
PDBExternal DatabaseDetails
His 23Arg 59conflict
Gly 135Ser 171conflict
Arg 161His 197conflict
LT: 1 - 160 (UniProt: G5ATV5)
PDBExternal DatabaseDetails
Ile 75Val 75conflict
LX: 1 - 156 (UniProt: A0AAX6PQW7)
PDBExternal DatabaseDetails
Val 32Ile 32conflict
Lc: 1 - 115 (UniProt: G5BJ16)
PDBExternal DatabaseDetails
Ala 4Thr 4conflict
Lys 5Glu 5conflict
Gly 70Ala 70conflict
Arg 90Thr 90conflict
Lg: 1 - 117 (UniProt: A0AAX6Q439)
PDBExternal DatabaseDetails
Gln 71Lys 71conflict
Lh: 1 - 123 (UniProt: A0AAX6PDT5)
PDBExternal DatabaseDetails
Thr 96Asn 96conflict
Lys 105Asn 105conflict
Tyr 119Phe 119conflict
Lk: 1 - 70 (UniProt: A0A0P6IYP5)
PDBExternal DatabaseDetails
Asp 68Glu 68conflict
Lr: 1 - 137 (UniProt: G5BVZ2)
PDBExternal DatabaseDetails
Val 9Ile 9conflict
Val 125Met 125conflict
Ser 137Ala 137conflict
SA: 1 - 295 (UniProt: A0A0P6K1L6)
PDBExternal DatabaseDetails
Thr 239Ala 273conflict
Ala 290Thr 324conflict
SB: 1 - 264 (UniProt: G5C1K3)
PDBExternal DatabaseDetails
Gly 236Ser 236conflict
Ala 242Thr 242conflict
SC: 1 - 293 (UniProt: A0AAX6QEX7)
PDBExternal DatabaseDetails
Leu 19Thr 19conflict
Ala 100Thr 100conflict
SD: 1 - 243 (UniProt: G5AS76)
PDBExternal DatabaseDetails
Ala 235Val 235conflict
SE: 1 - 263 (UniProt: A0A0P6JF61)
PDBExternal DatabaseDetails
Val 76Ile 76conflict
Val 111Ile 111conflict
Glu 165Asp 165conflict
Ala 213Thr 213conflict
Gln 260His 260conflict
SF: 1 - 204 (UniProt: G5B7K7)
PDBExternal DatabaseDetails
Ala 6Thr 6conflict
Thr 8Ala 8conflict
SI: 1 - 208 (UniProt: G5ARV4)
PDBExternal DatabaseDetails
Pro 40Ile 40conflict
Val 91Ile 91conflict
Ile 175Val 175conflict
SJ: 1 - 194 (UniProt: A0AAX6Q606)
PDBExternal DatabaseDetails
Leu 115Phe 115conflict
SK: 1 - 165 (UniProt: A0A0P6IZJ7)
PDBExternal DatabaseDetails
Pro 109Val 109conflict
Ala 115Met 115conflict
Phe 117Leu 117conflict
ST: 1 - 145 (UniProt: A0AAX6QEV3)
PDBExternal DatabaseDetails
Arg 88Met 88conflict
SU: 1 - 119 (UniProt: A0AAX6QEN2)
PDBExternal DatabaseDetails
Cys 18His 18conflict
Leu 19Arg 19conflict
Ile 23Thr 23conflict
SV: 1 - 83 (UniProt: G5C8F1)
PDBExternal DatabaseDetails
Ala 25Gly 25conflict
Arg 41Lys 41conflict
Thr 42Val 42conflict
Gly 54Ala 54conflict
Ile 79Val 79conflict
Asp 82Asn 82conflict
SX: 1 - 143 (UniProt: A0AAX6P1S3)
PDBExternal DatabaseDetails
Arg 23His 23conflict
SY: 1 - 133 (UniProt: A0AAX6PA11)
PDBExternal DatabaseDetails
Gln 10Arg 10conflict
Lys 15Asn 15conflict
SZ: 1 - 125 (UniProt: A0AAX6PPX8)
PDBExternal DatabaseDetails
Asp 124Glu 124conflict
Ala 125Pro 125conflict
Se: 1 - 133 (UniProt: A0AAX6PHM7)
PDBExternal DatabaseDetails
Glu 9Asp 9conflict
Leu 13Ile 13conflict
Gln 18His 18conflict
Asp 26Ala 26conflict
His 27Gln 27conflict
Ser 46Lys 46conflict
Glu 51Asp 51conflict
Thr 63Gly 63conflict
LB: 1 - 403 (UniProt: A0A0P6IYN5)
PDBExternal DatabaseDetails
Ala 37Pro 37conflict
Val 41Ile 41conflict
Thr 101Ser 101conflict
Thr 141Met 141conflict
Glu 147Asp 147conflict
Asn 151Ser 151conflict
Val 205Ile 205conflict
Asn 208Ser 208conflict
Ile 331Val 331conflict
Met 382Ile 382conflict
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains80
Total formula weight3700153.0
Non-Polymers*Number of molecules331
Total formula weight8168.3
All*Total formula weight3708321.2
*Water molecules are not included.

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PDB entries from 2026-08-19

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