9SVJ
Structural characterization of hibernating ribosomes in the Gram-negative pathogen Acinetobacter baumannii
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (0) | Large ribosomal subunit protein bL33 | polymer | 51 | 6105.3 | 1 | UniProt (D0CAL1) Pfam (PF00471) | Acinetobacter baumannii | |
| 2 | B (1) | Large ribosomal subunit protein bL34 | polymer | 44 | 5192.2 | 1 | UniProt (D0CG06) Pfam (PF00468) | Acinetobacter baumannii | |
| 3 | C (2) | Large ribosomal subunit protein bL35 | polymer | 64 | 7424.1 | 1 | UniProt (D0CA77) Pfam (PF01632) | Acinetobacter baumannii | |
| 4 | D (3) | Large ribosomal subunit protein bL36 | polymer | 38 | 4276.2 | 1 | UniProt (D0CD18) Pfam (PF00444) | Acinetobacter baumannii | |
| 5 | E (4) | Large ribosomal subunit protein bL31 | polymer | 74 | 8343.7 | 1 | UniProt (D0CBZ8) Pfam (PF01197) | Acinetobacter baumannii | |
| 6 | F (A) | 16S rRNA (1537-MER) | polymer | 1537 | 498045.1 | 1 | Acinetobacter baumannii | ||
| 7 | G (B) | Small ribosomal subunit protein uS2 | polymer | 250 | 27680.4 | 1 | UniProt (D0CC74) Pfam (PF00318) | Acinetobacter baumannii | |
| 8 | H (C) | Small ribosomal subunit protein uS3 | polymer | 215 | 24118.2 | 1 | UniProt (B7GW08) | Acinetobacter baumannii | 30S ribosomal protein S3 |
| 9 | I (D) | Small ribosomal subunit protein uS4 | polymer | 208 | 23311.8 | 1 | UniProt (D0CD21) Pfam (PF00163) Pfam (PF01479) | Acinetobacter baumannii | |
| 10 | J (E) | Small ribosomal subunit protein uS5 | polymer | 165 | 17181.8 | 1 | UniProt (D0CD14) Pfam (PF03719) Pfam (PF00333) | Acinetobacter baumannii | |
| 11 | K (F) | Small ribosomal subunit protein bS6 | polymer | 127 | 14987.0 | 1 | UniProt (D0C5Z0) Pfam (PF01250) | Acinetobacter baumannii | |
| 12 | L (G) | Small ribosomal subunit protein uS7 | polymer | 156 | 17733.7 | 1 | UniProt (D0C9P7) Pfam (PF00177) | Acinetobacter baumannii | |
| 13 | M (H) | Small ribosomal subunit protein uS8 | polymer | 131 | 14250.7 | 1 | UniProt (D0CD11) Pfam (PF00410) | Acinetobacter baumannii | |
| 14 | N (I) | Small ribosomal subunit protein uS9 | polymer | 128 | 14287.6 | 1 | UniProt (D0CG36) Pfam (PF00380) | Acinetobacter baumannii | |
| 15 | O (J) | Small ribosomal subunit protein uS10 | polymer | 103 | 11718.5 | 1 | UniProt (D0CCZ6) Pfam (PF00338) | Acinetobacter baumannii | |
| 16 | P (K) | Small ribosomal subunit protein uS11 | polymer | 128 | 13559.5 | 1 | UniProt (D0CD20) Pfam (PF00411) | Acinetobacter baumannii | |
| 17 | Q (L) | Small ribosomal subunit protein uS12 | polymer | 124 | 13843.2 | 1 | UniProt (B7GYN0) | Acinetobacter baumannii | 30S ribosomal protein S12 |
| 18 | R (M) | Small ribosomal subunit protein uS13 | polymer | 118 | 13295.6 | 1 | UniProt (D0CD19) Pfam (PF00416) | Acinetobacter baumannii | |
| 19 | S (N) | Small ribosomal subunit protein uS14 | polymer | 101 | 11438.4 | 1 | UniProt (D0CD10) Pfam (PF00253) | Acinetobacter baumannii | |
| 20 | T (O) | Small ribosomal subunit protein uS15 | polymer | 89 | 10145.6 | 1 | UniProt (D0CAU9) Pfam (PF00312) | Acinetobacter baumannii | |
| 21 | U (P) | Small ribosomal subunit protein bS16 | polymer | 83 | 9215.5 | 1 | UniProt (D0CCR5) Pfam (PF00886) | Acinetobacter baumannii | |
| 22 | V (Q) | Small ribosomal subunit protein uS17 | polymer | 85 | 9543.1 | 1 | UniProt (D0CD06) Pfam (PF00366) | Acinetobacter baumannii | |
| 23 | W (R) | Small ribosomal subunit protein bS18 | polymer | 75 | 9009.5 | 1 | UniProt (D0C5Y9) Pfam (PF01084) | Acinetobacter baumannii | |
| 24 | X (S) | Small ribosomal subunit protein uS19 | polymer | 91 | 10207.0 | 1 | UniProt (D0CD01) Pfam (PF00203) | Acinetobacter baumannii | |
| 25 | Y (T) | Small ribosomal subunit protein bS20 | polymer | 88 | 9723.4 | 1 | UniProt (D0C7N1) Pfam (PF01649) | Acinetobacter baumannii | |
| 26 | Z (V) | tRNA (77-MER) | polymer | 77 | 24832.9 | 1 | Escherichia coli | ||
| 27 | AA (W) | non-Stop mRNA | polymer | 15 | 4952.0 | 1 | Escherichia coli | ||
| 28 | BA (X) | Putative ribosomal subunit interface protein | polymer | 116 | 13330.9 | 1 | UniProt (D0CFJ2) Pfam (PF02482) | Acinetobacter baumannii | |
| 29 | CA (a) | 23S rRNA (2890-MER) | polymer | 2893 | 937300.3 | 1 | Acinetobacter baumannii | ||
| 30 | DA (b) | 5S rRNA | polymer | 115 | 36997.0 | 1 | Acinetobacter baumannii | ||
| 31 | EA (c) | Large ribosomal subunit protein uL2 | polymer | 274 | 30346.1 | 1 | UniProt (B7GW05) | Acinetobacter baumannii | 50S ribosomal protein L2 |
| 32 | FA (d) | Large ribosomal subunit protein uL3 | polymer | 212 | 22526.7 | 1 | UniProt (V5V9M8) | Acinetobacter baumannii | |
| 33 | GA (e) | Large ribosomal subunit protein uL4 | polymer | 200 | 21583.9 | 1 | UniProt (D0CCZ8) Pfam (PF00573) | Acinetobacter baumannii | |
| 34 | HA (f) | Large ribosomal subunit protein uL5 | polymer | 178 | 20051.5 | 1 | UniProt (D0CD09) Pfam (PF00281) Pfam (PF00673) | Acinetobacter baumannii | |
| 35 | IA (g) | Large ribosomal subunit protein uL6 | polymer | 177 | 19126.0 | 1 | UniProt (D0CD12) Pfam (PF00347) | Acinetobacter baumannii | |
| 36 | JA (h) | Large ribosomal subunit protein bL9 | polymer | 148 | 15801.0 | 1 | UniProt (D0C5Y8) Pfam (PF01281) Pfam (PF03948) | Acinetobacter baumannii | |
| 37 | KA (i) | Large ribosomal subunit protein uL13 | polymer | 142 | 15981.5 | 1 | UniProt (B7GWI2) | Acinetobacter baumannii | 50S ribosomal protein L13 |
| 38 | LA (j) | Large ribosomal subunit protein uL14 | polymer | 122 | 13523.9 | 1 | UniProt (D0CD07) Pfam (PF00238) | Acinetobacter baumannii | |
| 39 | MA (k) | Large ribosomal subunit protein uL15 | polymer | 146 | 15509.9 | 1 | UniProt (D0CD16) Pfam (PF00828) | Acinetobacter baumannii | |
| 40 | NA (l) | Large ribosomal subunit protein uL16 | polymer | 137 | 15529.4 | 1 | UniProt (D0CD04) Pfam (PF00252) | Acinetobacter baumannii | |
| 41 | OA (m) | Large ribosomal subunit protein bL17 | polymer | 125 | 14022.2 | 1 | UniProt (B7IA13) | Acinetobacter baumannii | 50S ribosomal protein L17 |
| 42 | PA (n) | Large ribosomal subunit protein uL18 | polymer | 116 | 12443.3 | 1 | UniProt (D0CD13) Pfam (PF00861) | Acinetobacter baumannii | |
| 43 | QA (o) | Large ribosomal subunit protein bL19 | polymer | 122 | 13619.9 | 1 | UniProt (D0CCR8) Pfam (PF01245) | Acinetobacter baumannii | |
| 44 | RA (p) | Large ribosomal subunit protein bL20 | polymer | 119 | 13468.9 | 1 | UniProt (D0CA76) Pfam (PF00453) | Acinetobacter baumannii | |
| 45 | SA (q) | Large ribosomal subunit protein bL21 | polymer | 103 | 11496.4 | 1 | UniProt (D0CDQ6) Pfam (PF00829) | Acinetobacter baumannii | |
| 46 | TA (r) | Large ribosomal subunit protein uL22 | polymer | 109 | 11828.9 | 1 | UniProt (D0CD02) Pfam (PF00237) | Acinetobacter baumannii | |
| 47 | UA (s) | Large ribosomal subunit protein uL23 | polymer | 106 | 11607.4 | 1 | UniProt (D0CCZ9) Pfam (PF00276) | Acinetobacter baumannii | |
| 48 | VA (t) | Large ribosomal subunit protein uL24 | polymer | 105 | 11187.9 | 1 | UniProt (D0CD08) Pfam (PF00467) Pfam (PF17136) | Acinetobacter baumannii | |
| 49 | WA (u) | Large ribosomal subunit protein bL25 | polymer | 98 | 10942.6 | 1 | UniProt (B7GYQ9) | Acinetobacter baumannii | 50S ribosomal protein L25 |
| 50 | XA (v) | Large ribosomal subunit protein bL27 | polymer | 85 | 9072.4 | 1 | UniProt (D0CDQ7) Pfam (PF01016) | Acinetobacter baumannii | |
| 51 | YA (w) | Large ribosomal subunit protein bL28 | polymer | 78 | 9125.8 | 1 | UniProt (D0CAL0) Pfam (PF00830) | Acinetobacter baumannii | |
| 52 | ZA (x) | Large ribosomal subunit protein uL29 | polymer | 64 | 7318.5 | 1 | UniProt (D0CD05) Pfam (PF00831) | Acinetobacter baumannii | |
| 53 | AB (y) | Large ribosomal subunit protein uL30 | polymer | 58 | 6654.8 | 1 | UniProt (D0CD15) Pfam (PF00327) | Acinetobacter baumannii | |
| 54 | BB (z) | Large ribosomal subunit protein bL32 | polymer | 61 | 7096.9 | 1 | UniProt (D0C9K5) Pfam (PF01783) | Acinetobacter baumannii | |
| 55 | AF, AG, AR, AS, AT... (A, a, c, 1, 3...) | POTASSIUM ION | non-polymer | 39.1 | 169 | Chemie (K) PubChem (813) | |||
| 56 | DB, FB (3, 4) | ZINC ION | non-polymer | 65.4 | 2 | Chemie (ZN) PubChem (32051) | |||
| 57 | AC, AD, AE, AH, AI... (A, a, c, d, k...) | MAGNESIUM ION | non-polymer | 24.3 | 360 | Chemie (MG) PubChem (888) |
Sequence modifications
K: 1 - 128 (UniProt: D0CD20)
| PDB | External Database | Details |
|---|---|---|
| Ias 118 | Asn 118 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 54 |
| Total formula weight | 2161915.8 | |
| Non-Polymers* | Number of molecules | 531 |
| Total formula weight | 15488.2 | |
| All* | Total formula weight | 2177403.9 |
