9SDP
Cryo-EM structure of the Arabidopsis thaliana 40S ribosomal subunit
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (9) | 18S RNA | polymer | 1804 | 581965.7 | 1 | GenBank (X16077.1) | Arabidopsis thaliana (thale cress) | |
| 2 | B (BA) | Small ribosomal subunit protein uS2y | polymer | 280 | 30682.8 | 1 | UniProt (Q8H173) | Arabidopsis thaliana (thale cress) | 40S ribosomal protein Sa-2,p40 protein homolog |
| 3 | C (BB) | Small ribosomal subunit protein eS1z | polymer | 262 | 29906.7 | 1 | UniProt (Q9CAV0) | Arabidopsis thaliana (thale cress) | 40S ribosomal protein S3a-1 |
| 4 | D (BC) | Small ribosomal subunit protein uS5w | polymer | 276 | 30169.2 | 1 | UniProt (Q9SCM3) | Arabidopsis thaliana (thale cress) | 40S ribosomal protein S2-4 |
| 5 | E (BE) | Small ribosomal subunit protein eS4z | polymer | 261 | 29862.0 | 1 | UniProt (Q93VH9) | Arabidopsis thaliana (thale cress) | 40S ribosomal protein S4-1 |
| 6 | F (BG) | Small ribosomal subunit protein eS6y | polymer | 249 | 28228.2 | 1 | UniProt (P51430) | Arabidopsis thaliana (thale cress) | 40S ribosomal protein S6-2,Protein EMBRYO DEFECTIVE 3010 |
| 7 | G (BH) | Small ribosomal subunit protein eS7z | polymer | 191 | 21964.5 | 1 | UniProt (Q9C514) | Arabidopsis thaliana (thale cress) | 40S ribosomal protein S7-1 |
| 8 | H (BI) | Small ribosomal subunit protein eS8z | polymer | 222 | 25047.8 | 1 | UniProt (Q93VG5) | Arabidopsis thaliana (thale cress) | 40S ribosomal protein S8-1 |
| 9 | I (BJ) | Small ribosomal subunit protein uS4y | polymer | 197 | 23207.8 | 1 | UniProt (Q9FLF0) | Arabidopsis thaliana (thale cress) | 40S ribosomal protein S9-2 |
| 10 | J (BL) | Small ribosomal subunit protein uS17z | polymer | 160 | 17996.2 | 1 | UniProt (P16181) | Arabidopsis thaliana (thale cress) | 40S ribosomal protein S11-1,Protein EMBRYO DEFECTIVE 1080 |
| 11 | K (BN) | Small ribosomal subunit protein uS15y | polymer | 151 | 17123.2 | 1 | UniProt (P59224) | Arabidopsis thaliana (thale cress) | 40S ribosomal protein S13-2 |
| 12 | L (cS) | Small ribosomal subunit protein uS11x | polymer | 150 | 16268.8 | 1 | UniProt (P42036) | Arabidopsis thaliana (thale cress) | 40S ribosomal protein S14-3 |
| 13 | M (BV) | Small ribosomal subunit protein eS21z | polymer | 82 | 9086.2 | 1 | UniProt (Q9M337) | Arabidopsis thaliana (thale cress) | 40S ribosomal protein S21-1 |
| 14 | N (BW) | Small ribosomal subunit protein uS8z/uS8w | polymer | 130 | 14829.4 | 1 | UniProt (P42798) | Arabidopsis thaliana (thale cress) | 40S ribosomal protein S15a-1 |
| 15 | O (BX) | Small ribosomal subunit protein uS12y | polymer | 142 | 15770.6 | 1 | UniProt (P49201) | Arabidopsis thaliana (thale cress) | 40S ribosomal protein S23-2,S12 |
| 16 | P (BY) | Small ribosomal subunit protein eS24z | polymer | 133 | 15412.3 | 1 | UniProt (Q9SS17) | Arabidopsis thaliana (thale cress) | 40S ribosomal protein S24-1 |
| 17 | Q (BZ) | Small ribosomal subunit protein eS26x | polymer | 130 | 14662.1 | 1 | UniProt (Q9LYK9) | Arabidopsis thaliana (thale cress) | 40S ribosomal protein S26-3 |
| 18 | R (Bb) | Small ribosomal subunit protein eS27y | polymer | 86 | 9614.2 | 1 | UniProt (Q9M2F1) | Arabidopsis thaliana (thale cress) | 40S ribosomal protein S27-2 |
| 19 | S (Be) | Small ribosomal subunit protein eS30z/eS30y/eS30x | polymer | 62 | 6910.2 | 1 | UniProt (P49689) | Arabidopsis thaliana (thale cress) | 40S ribosomal protein S30 |
| 20 | T (Cn) | Small ribosomal subunit protein eS32 eS32z/eS32y/eS32x/eS32w/eS32v | polymer | 25 | 3445.4 | 1 | UniProt (P62120) | Arabidopsis thaliana (thale cress) | 60S ribosomal protein L41,Large ribosomal subunit protein eL41z/eL41y/eL41x/eL41w/eL41v |
| 21 | U, V, W (9) | POTASSIUM ION | non-polymer | 39.1 | 3 | Chemie (K) PubChem (813) | |||
| 22 | AA, BA, CA, DA, EA... (9) | MAGNESIUM ION | non-polymer | 24.3 | 14 | Chemie (MG) PubChem (888) | |||
| 23 | LA (BZ) | ZINC ION | non-polymer | 65.4 | 1 | Chemie (ZN) PubChem (32051) |
Sequence modifications
9: 1 - 1808 (GenBank: X16077.1)
| PDB | External Database | Details |
|---|---|---|
| Uy1 604 | U 689 | modified residue |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 20 |
| Total formula weight | 942153.2 | |
| Non-Polymers* | Number of molecules | 18 |
| Total formula weight | 523.0 | |
| All* | Total formula weight | 942676.2 |
