9SDP

Cryo-EM structure of the Arabidopsis thaliana 40S ribosomal subunit

This is a non-PDB format compatible entry.

Functional Information from GO Data

Chain	GOid	namespace	contents
BA	0000028	biological_process	ribosomal small subunit assembly
BA	0002181	biological_process	cytoplasmic translation
BA	0003735	molecular_function	structural constituent of ribosome
BA	0005737	cellular_component	cytoplasm
BA	0006412	biological_process	translation
BA	0009507	cellular_component	chloroplast
BA	0022626	cellular_component	cytosolic ribosome
BA	0022627	cellular_component	cytosolic small ribosomal subunit
Bb	0003729	molecular_function	mRNA binding
Bb	0003735	molecular_function	structural constituent of ribosome
Bb	0005737	cellular_component	cytoplasm
Bb	0005829	cellular_component	cytosol
Bb	0005840	cellular_component	ribosome
Bb	0006364	biological_process	rRNA processing
Bb	0006412	biological_process	translation
Bb	0009505	cellular_component	plant-type cell wall
Bb	0009506	cellular_component	plasmodesma
Bb	0022626	cellular_component	cytosolic ribosome
Bb	0022627	cellular_component	cytosolic small ribosomal subunit
BB	0003729	molecular_function	mRNA binding
BB	0003735	molecular_function	structural constituent of ribosome
BB	0005737	cellular_component	cytoplasm
BB	0005794	cellular_component	Golgi apparatus
BB	0005829	cellular_component	cytosol
BB	0006412	biological_process	translation
BB	0009506	cellular_component	plasmodesma
BB	0022626	cellular_component	cytosolic ribosome
BB	0022627	cellular_component	cytosolic small ribosomal subunit
BC	0003729	molecular_function	mRNA binding
BC	0003735	molecular_function	structural constituent of ribosome
BC	0005829	cellular_component	cytosol
BC	0006412	biological_process	translation
BC	0009506	cellular_component	plasmodesma
BC	0022627	cellular_component	cytosolic small ribosomal subunit
Be	0003729	molecular_function	mRNA binding
Be	0003735	molecular_function	structural constituent of ribosome
Be	0005730	cellular_component	nucleolus
Be	0005737	cellular_component	cytoplasm
Be	0005739	cellular_component	mitochondrion
Be	0005886	cellular_component	plasma membrane
Be	0008150	biological_process	biological_process
Be	0009536	cellular_component	plastid
Be	0022627	cellular_component	cytosolic small ribosomal subunit
BE	0000325	cellular_component	plant-type vacuole
BE	0003729	molecular_function	mRNA binding
BE	0003735	molecular_function	structural constituent of ribosome
BE	0005737	cellular_component	cytoplasm
BE	0005739	cellular_component	mitochondrion
BE	0005794	cellular_component	Golgi apparatus
BE	0006412	biological_process	translation
BE	0022627	cellular_component	cytosolic small ribosomal subunit
BG	0003729	molecular_function	mRNA binding
BG	0003735	molecular_function	structural constituent of ribosome
BG	0005634	cellular_component	nucleus
BG	0005886	cellular_component	plasma membrane
BG	0009506	cellular_component	plasmodesma
BG	0022626	cellular_component	cytosolic ribosome
BG	0022627	cellular_component	cytosolic small ribosomal subunit
BH	0003729	molecular_function	mRNA binding
BH	0003735	molecular_function	structural constituent of ribosome
BH	0005634	cellular_component	nucleus
BH	0006364	biological_process	rRNA processing
BH	0009505	cellular_component	plant-type cell wall
BH	0022626	cellular_component	cytosolic ribosome
BH	0022627	cellular_component	cytosolic small ribosomal subunit
BH	0032040	cellular_component	small-subunit processome
BH	0042274	biological_process	ribosomal small subunit biogenesis
BH	0042742	biological_process	defense response to bacterium
BI	0002181	biological_process	cytoplasmic translation
BI	0003729	molecular_function	mRNA binding
BI	0003735	molecular_function	structural constituent of ribosome
BI	0005515	molecular_function	protein binding
BI	0005730	cellular_component	nucleolus
BI	0005737	cellular_component	cytoplasm
BI	0005794	cellular_component	Golgi apparatus
BI	0009505	cellular_component	plant-type cell wall
BI	0009506	cellular_component	plasmodesma
BI	0009507	cellular_component	chloroplast
BI	0022626	cellular_component	cytosolic ribosome
BI	0022627	cellular_component	cytosolic small ribosomal subunit
BJ	0003729	molecular_function	mRNA binding
BJ	0003735	molecular_function	structural constituent of ribosome
BJ	0005515	molecular_function	protein binding
BJ	0005794	cellular_component	Golgi apparatus
BJ	0009506	cellular_component	plasmodesma
BJ	0009507	cellular_component	chloroplast
BJ	0009536	cellular_component	plastid
BJ	0019843	molecular_function	rRNA binding
BJ	0022627	cellular_component	cytosolic small ribosomal subunit
BJ	0042274	biological_process	ribosomal small subunit biogenesis
BL	0003729	molecular_function	mRNA binding
BL	0003735	molecular_function	structural constituent of ribosome
BL	0005737	cellular_component	cytoplasm
BL	0005829	cellular_component	cytosol
BL	0009505	cellular_component	plant-type cell wall
BL	0009506	cellular_component	plasmodesma
BL	0022626	cellular_component	cytosolic ribosome
BL	0022627	cellular_component	cytosolic small ribosomal subunit
BN	0000462	biological_process	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
BN	0000911	biological_process	cytokinesis by cell plate formation
BN	0003729	molecular_function	mRNA binding
BN	0003735	molecular_function	structural constituent of ribosome
BN	0005730	cellular_component	nucleolus
BN	0005783	cellular_component	endoplasmic reticulum
BN	0005794	cellular_component	Golgi apparatus
BN	0005829	cellular_component	cytosol
BN	0006412	biological_process	translation
BN	0009507	cellular_component	chloroplast
BN	0009965	biological_process	leaf morphogenesis
BN	0010090	biological_process	trichome morphogenesis
BN	0022627	cellular_component	cytosolic small ribosomal subunit
BN	0032040	cellular_component	small-subunit processome
BV	0000447	biological_process	endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
BV	0000461	biological_process	endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
BV	0002181	biological_process	cytoplasmic translation
BV	0003735	molecular_function	structural constituent of ribosome
BV	0005634	cellular_component	nucleus
BV	0005737	cellular_component	cytoplasm
BV	0005829	cellular_component	cytosol
BV	0009658	biological_process	chloroplast organization
BV	0022626	cellular_component	cytosolic ribosome
BV	0022627	cellular_component	cytosolic small ribosomal subunit
BW	0000325	cellular_component	plant-type vacuole
BW	0003674	molecular_function	molecular_function
BW	0003735	molecular_function	structural constituent of ribosome
BW	0005737	cellular_component	cytoplasm
BW	0005739	cellular_component	mitochondrion
BW	0005794	cellular_component	Golgi apparatus
BW	0005829	cellular_component	cytosol
BW	0008150	biological_process	biological_process
BW	0009505	cellular_component	plant-type cell wall
BW	0009506	cellular_component	plasmodesma
BW	0009507	cellular_component	chloroplast
BW	0022626	cellular_component	cytosolic ribosome
BW	0022627	cellular_component	cytosolic small ribosomal subunit
BX	0003729	molecular_function	mRNA binding
BX	0003735	molecular_function	structural constituent of ribosome
BX	0005737	cellular_component	cytoplasm
BX	0005794	cellular_component	Golgi apparatus
BX	0005840	cellular_component	ribosome
BX	0005886	cellular_component	plasma membrane
BX	0006412	biological_process	translation
BX	0022626	cellular_component	cytosolic ribosome
BX	0022627	cellular_component	cytosolic small ribosomal subunit
BY	0000325	cellular_component	plant-type vacuole
BY	0002181	biological_process	cytoplasmic translation
BY	0003729	molecular_function	mRNA binding
BY	0003735	molecular_function	structural constituent of ribosome
BY	0005730	cellular_component	nucleolus
BY	0005737	cellular_component	cytoplasm
BY	0005794	cellular_component	Golgi apparatus
BY	0005829	cellular_component	cytosol
BY	0009507	cellular_component	chloroplast
BY	0022626	cellular_component	cytosolic ribosome
BY	0022627	cellular_component	cytosolic small ribosomal subunit
BZ	0003729	molecular_function	mRNA binding
BZ	0003735	molecular_function	structural constituent of ribosome
BZ	0005634	cellular_component	nucleus
BZ	0005730	cellular_component	nucleolus
BZ	0005737	cellular_component	cytoplasm
BZ	0005829	cellular_component	cytosol
BZ	0015935	cellular_component	small ribosomal subunit
BZ	0022626	cellular_component	cytosolic ribosome
BZ	0022627	cellular_component	cytosolic small ribosomal subunit
Cn	0003674	molecular_function	molecular_function
Cn	0005575	cellular_component	cellular_component
Cn	0006412	biological_process	translation
Cn	0008150	biological_process	biological_process
Cn	0022625	cellular_component	cytosolic large ribosomal subunit
cS	0000028	biological_process	ribosomal small subunit assembly
cS	0003735	molecular_function	structural constituent of ribosome
cS	0005737	cellular_component	cytoplasm
cS	0005829	cellular_component	cytosol
cS	0006412	biological_process	translation

Functional Information from PROSITE/UniProt

site_id	PS00053
Number of Residues	18
Details	RIBOSOMAL_S8 Ribosomal protein S8 signature. GyiVLTTSaGIMdheeAR

Chain	Residue	Details
BW	GLY100-ARG117

---

site_id	PS00054
Number of Residues	23
Details	RIBOSOMAL_S11 Ribosomal protein S11 signature. LrALarS.GMkIgrieDvTPiPTD

Chain	Residue	Details
cS	LEU115-ASP137

---

site_id	PS00055
Number of Residues	8
Details	RIBOSOMAL_S12 Ribosomal protein S12 signature. KqPNSAiR

Chain	Residue	Details
BX	LYS59-ARG66

---

site_id	PS00056
Number of Residues	13
Details	RIBOSOMAL_S17 Ribosomal protein S17 signature. GDhIiIgQcRPLS

Chain	Residue	Details
BL	GLY143-SER155

---

site_id	PS00362
Number of Residues	31
Details	RIBOSOMAL_S15 Ribosomal protein S15 signature. IrkHLernRkDkdSkfrLilVesrihrLarY

Chain	Residue	Details
BN	ILE98-TYR128

---

site_id	PS00528
Number of Residues	15
Details	RIBOSOMAL_S4E Ribosomal protein S4e signature. HlKRLNaPkhWmLdK

Chain	Residue	Details
BE	HIS8-LYS22

---

site_id	PS00529
Number of Residues	23
Details	RIBOSOMAL_S24E Ribosomal protein S24e signature. FGggKSsGFGlIYDTvesakkfE

Chain	Residue	Details
BY	PHE66-GLU88

---

site_id	PS00578
Number of Residues	12
Details	RIBOSOMAL_S6E Ribosomal protein S6e signature. IMGGcDkqGfPM

Chain	Residue	Details
BG	ILE52-MET63

---

site_id	PS00585
Number of Residues	33
Details	RIBOSOMAL_S5 Ribosomal protein S5 signature. GQrtrFkAfiVVGDsn.GhVGlGvkcsk.EVat.AI

Chain	Residue	Details
BC	GLY104-ILE136

---

site_id	PS00632
Number of Residues	25
Details	RIBOSOMAL_S4 Ribosomal protein S4 signature. LErRLqtiVFKsgmAkSihhARvLI

Chain	Residue	Details
BJ	LEU107-ILE131

---

site_id	PS00733
Number of Residues	8
Details	RIBOSOMAL_S26E Ribosomal protein S26e signature. YCVSCAIH

Chain	Residue	Details
BZ	TYR73-HIS80

---

site_id	PS00948
Number of Residues	14
Details	RIBOSOMAL_S7E Ribosomal protein S7e signature. RLvRELEKKFSgKD

Chain	Residue	Details
BH	ARG79-ASP92

---

site_id	PS00963
Number of Residues	25
Details	RIBOSOMAL_S2_2 Ribosomal protein S2 signature 2. PrlLILtDprtDhqpIkEgalgNIP

Chain	Residue	Details
BA	PRO124-PRO148

---

site_id	PS00996
Number of Residues	9
Details	RIBOSOMAL_S21E Ribosomal protein S21e signature. LYIPRKCSA

Chain	Residue	Details
BV	LEU11-ALA19

---

site_id	PS01168
Number of Residues	33
Details	RIBOSOMAL_S27E Ribosomal protein S27e signature. KCqgCfnittvFShSqtvvvCgnCQtiLcqPtG

Chain	Residue	Details
Bb	LYS38-GLY70

---

site_id	PS01191
Number of Residues	13
Details	RIBOSOMAL_S3AE Ribosomal protein S3Ae signature. LkHRVfEvSLaDL

Chain	Residue	Details
BB	LEU61-LEU73

---

site_id	PS01193
Number of Residues	20
Details	RIBOSOMAL_S8E Ribosomal protein S8e signature. RraTGGkqkqw.RkKrKyEMG

Chain	Residue	Details
BI	ARG11-GLY30

---

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	63
Details	Domain: {"description":"S5 DRBM","evidences":[{"source":"PROSITE-ProRule","id":"PRU00268","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI2
Number of Residues	62
Details	Domain: {"description":"S4 RNA-binding"}

Chain

Residue

Details

---

site_id	SWS_FT_FI3
Number of Residues	35
Details	Coiled coil: {"evidences":[{"evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI4
Number of Residues	27
Details	Compositional bias: {"description":"Basic residues","evidences":[{"source":"SAM","id":"MobiDB-lite","evidenceCode":"ECO:0000256"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI5
Number of Residues	1
Details	Modified residue: {"description":"Hydroxyproline","evidences":[{"evidenceCode":"ECO:0000250"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI6
Number of Residues	22
Details	Zinc finger: {"description":"C4-type","evidences":[{"evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

---