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9SDF

Structure at 1.9 A resolution of Thermus thermophilus tyrosyl-tRNA synthetase bound to wild-type modified tRNA(Tyr), tyrosine and AMP

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(A)
Tyrosine--tRNA ligasepolymer43248786.21UniProt (P83453)Thermus thermophilus HB27Tyrosyl-tRNA synthetase,TyrRS
2B
(T)
Thermus thermophilus tRNA(Tyr)(GUA) (86-MER)polymer8627923.91Thermus thermophilus HB27
3C
(A)
ADENOSINE MONOPHOSPHATEnon-polymer347.21Chemie (AMP)
PubChem (16397049)
PubChem (16760266)
PubChem (224)
PubChem (40467049)
PubChem (40469468)
PubChem (34768)
PubChem (44348067)
PubChem (83862)
PubChem (45358029)
PubChem (46874558)
PubChem (40459109)
PubChem (57358045)
PubChem (57879893)
PubChem (57879902)
PubChem (46875232)
PubChem (446048)
PubChem (515384)
PubChem (638042)
PubChem (177678969)
PubChem (6083)
PubChem (1549371)
PubChem (5316444)
PubChem (92144436)
PubChem (5742864)
PubChem (122197642)
PubChem (12358354)
PubChem (12163610)
PubChem (12358355)
PubChem (162290139)
PubChem (162946266)
PubChem (171699505)
4D
(A)
TYROSINEnon-polymer181.21Chemie (TYR)
PubChem (1153)
PubChem (6057)
PubChem (71098)
5E, J, N, O, P
(A, T)
DI(HYDROXYETHYL)ETHERnon-polymer106.15Chemie (PEG)
PubChem (8117)
6F, Q
(A, T)
SULFATE IONnon-polymer96.12Chemie (SO4)
7G, H, I, L, R
(A, T)
PENTAETHYLENE GLYCOLnon-polymer238.35Chemie (1PE)
PubChem (62551)
8K
(A)
TRIETHYLENE GLYCOLnon-polymer150.21Chemie (PGE)
9M
(T)
MAGNESIUM IONnon-polymer24.31Chemie (MG)
PubChem (888)
10S, T
(A, T)
waterwater18.0497Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains2
Total formula weight76710.1
Non-Polymers*Number of molecules16
Total formula weight2617.0
All*Total formula weight79327.1
*Water molecules are not included.

253389

PDB entries from 2026-05-13

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