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9S2F

Human debranched intron spliceosome (DIS)

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(35)
Probable ATP-dependent RNA helicase DHX35polymer70379012.21UniProt (Q9H5Z1)
Pfam (PF00271)
Pfam (PF04408)
Pfam (PF21010)
Pfam (PF07717)
Homo sapiens (human)DEAH box protein 35
2B
(5)
U5 snRNApolymer11636908.71GenBank (36515)Homo sapiens (human)
3C
(A)
Pre-mRNA-processing-splicing factor 8polymer2335273974.31UniProt (Q6P2Q9)
Pfam (PF12134)
Pfam (PF01398)
Pfam (PF08084)
Pfam (PF08082)
Pfam (PF08083)
Pfam (PF10598)
Pfam (PF10597)
Pfam (PF10596)
Homo sapiens (human)220 kDa U5 snRNP-specific protein,PRP8 homolog,Splicing factor Prp8,p220
4D
(B)
U5 small nuclear ribonucleoprotein 200 kDa helicasepolymer2136244823.41UniProt (O75643)
Pfam (PF21188)
Pfam (PF18149)
Pfam (PF00270)
Pfam (PF00271)
Pfam (PF23445)
Pfam (PF02889)
Homo sapiens (human)Activating signal cointegrator 1 complex subunit 3-like 1,BRR2 homolog,U5 snRNP-specific 200 kDa protein,U5-200KD
5E
(C)
116 kDa U5 small nuclear ribonucleoprotein componentpolymer972109560.61UniProt (Q15029)
Pfam (PF16004)
Pfam (PF00009)
Pfam (PF03144)
Pfam (PF14492)
Pfam (PF03764)
Pfam (PF00679)
Homo sapiens (human)Elongation factor Tu GTP-binding domain-containing protein 2,SNU114 homolog,hSNU114,U5 snRNP-specific protein,116 kDa,U5-116 kDa
6F
(E)
U5 small nuclear ribonucleoprotein 40 kDa proteinpolymer35739359.51UniProt (Q96DI7)
Pfam (PF00400)
Homo sapiens (human)U5 snRNP 40 kDa protein,U5-40K,38 kDa-splicing factor,Prp8-binding protein,hPRP8BP,U5 snRNP-specific 40 kDa protein,WD repeat-containing protein 57
7G
(GP)
G patch domain-containing protein 1polymer931103514.31UniProt (Q9BRR8)
Pfam (PF07713)
Pfam (PF01585)
Pfam (PF26093)
Homo sapiens (human)Evolutionarily conserved G-patch domain-containing protein
8H
(I)
Pre-mRNA-splicing factor SYF1polymer855100148.71UniProt (Q9HCS7)
Pfam (PF23233)
Pfam (PF23220)
Pfam (PF23231)
Homo sapiens (human)Protein HCNP,XPA-binding protein 2
9I
(J)
Crooked neck-like protein 1polymer848100610.01UniProt (Q9BZJ0)
Pfam (PF23231)
Homo sapiens (human)Crooked neck homolog,hCrn
10J
(K)
Pre-mRNA-splicing factor SPF27polymer22526163.41UniProt (O75934)
Pfam (PF05700)
Homo sapiens (human)Breast carcinoma-amplified sequence 2,DNA amplified in mammary carcinoma 1 protein,Spliceosome-associated protein SPF 27
11K
(L)
Cell division cycle 5-like proteinpolymer80292406.91UniProt (Q99459)
Pfam (PF13921)
Pfam (PF11831)
Homo sapiens (human)Cdc5-like protein,Pombe cdc5-related protein
12L
(M)
Pre-mRNA-splicing factor SYF2polymer24328780.51UniProt (O95926)
Pfam (PF08231)
Homo sapiens (human)CCNDBP1-interactor,p29
13M
(N)
Protein BUD31 homologpolymer14417032.81UniProt (P41223)
Pfam (PF01125)
Homo sapiens (human)Protein EDG-2,Protein G10 homolog
14N
(O)
Pre-mRNA-splicing factor RBM22polymer42046959.61UniProt (Q9NW64)
Pfam (PF21369)
Pfam (PF25584)
Pfam (PF00076)
Homo sapiens (human)RNA-binding motif protein 22,Zinc finger CCCH domain-containing protein 16
15O
(P)
Spliceosome-associated protein CWC15 homologpolymer22926674.41UniProt (Q9P013)
Pfam (PF04889)
Homo sapiens (human)
16P
(Q)
Intron-binding protein aquariuspolymer1485171502.51UniProt (O60306)
Pfam (PF16399)
Pfam (PF21143)
Pfam (PF21144)
Pfam (PF13086)
Pfam (PF13087)
Homo sapiens (human)Intron-binding protein of 160 kDa,IBP160
17Q
(R)
SNW domain-containing protein 1polymer53661770.61UniProt (Q13573)
Pfam (PF02731)
Homo sapiens (human)Nuclear protein SkiP,Nuclear receptor coactivator NCoA-62,Ski-interacting protein
18R
(S)
Peptidyl-prolyl cis-trans isomerase-like 1polymer16618257.81UniProt (Q9Y3C6)
Pfam (PF00160)
Homo sapiens (human)PPIase,Rotamase PPIL1
19S
(T)
Pleiotropic regulator 1polymer51457280.81UniProt (O43660)
Pfam (PF00400)
Homo sapiens (human)
20T
(W)
Pre-mRNA-processing factor 17polymer57965612.21UniProt (O60508)
Pfam (PF00400)
Homo sapiens (human)Cell division cycle 40 homolog,EH-binding protein 3,Ehb3,PRP17 homolog,hPRP17
21U
(WD)
WD repeat domain-containing protein 83polymer31534383.71UniProt (Q9BRX9)
Pfam (PF00400)
Homo sapiens (human)Mitogen-activated protein kinase organizer 1,MAPK organizer 1
22V
(Z)
Coiled-coil domain-containing protein 12polymer16619223.81UniProt (Q8WUD4)
Pfam (PF08315)
Homo sapiens (human)
23W
(a)
Small nuclear ribonucleoprotein Sm D3polymer12613940.31UniProt (P62318)
Pfam (PF01423)
Homo sapiens (human)Sm-D3,snRNP core protein D3
24X
(b)
Small nuclear ribonucleoprotein-associated proteins B and B'polymer24024642.11UniProt (P14678)
Pfam (PF01423)
Homo sapiens (human)snRNP-B,Sm protein B/B',Sm-B/B',SmB/B'
25Y
(c)
Small nuclear ribonucleoprotein Sm D1polymer11913310.71UniProt (P62314)
Pfam (PF01423)
Homo sapiens (human)Sm-D1,Sm-D autoantigen,snRNP core protein D1
26Z
(d)
Small nuclear ribonucleoprotein Sm D2polymer11813551.91UniProt (P62316)
Pfam (PF01423)
Homo sapiens (human)Sm-D2,snRNP core protein D2
27AA
(e)
Small nuclear ribonucleoprotein Epolymer9210817.61UniProt (P62304)
Pfam (PF01423)
Homo sapiens (human)snRNP-E,Sm protein E,Sm-E,SmE
28BA
(f)
Small nuclear ribonucleoprotein Fpolymer869734.21UniProt (P62306)
Pfam (PF01423)
Homo sapiens (human)snRNP-F,Sm protein F,SmF
29CA
(g)
Small nuclear ribonucleoprotein Gpolymer768508.11UniProt (P62308)
Pfam (PF01423)
Homo sapiens (human)snRNP-G,Sm protein G,Sm-G,SmG
30DA, EA, FA, GA
(q, r, s, t)
Pre-mRNA-processing factor 19polymer50455245.54UniProt (Q9UMS4)
Pfam (PF04564)
Pfam (PF08606)
Pfam (PF24814)
Homo sapiens (human)Nuclear matrix protein 200,PRP19/PSO4 homolog,hPso4,RING-type E3 ubiquitin transferase PRP19,Senescence evasion factor
31HA
(y)
Peptidyl-prolyl cis-trans isomerase Epolymer30133475.81UniProt (Q9UNP9)
Pfam (PF00076)
Pfam (PF00160)
Homo sapiens (human)PPIase E,Cyclophilin E,Cyclophilin-33,Rotamase E
32IA
(D)
Pre-mRNA-splicing factor ISY1 homologpolymer28533046.31UniProt (Q9ULR0)
Pfam (PF06246)
Homo sapiens (human)
33JA
(IN)
Intronpolymer103016.71Homo sapiens
34KA
(6)
U6 snRNApolymer10634098.31GenBank (NR_004394.1)Homo sapiens (human)
35LA
(A)
INOSITOL HEXAKISPHOSPHATEnon-polymer660.01Chemie (IHP)
36MA
(C)
GUANOSINE-5'-TRIPHOSPHATEnon-polymer523.21Chemie (GTP)
37NA
(C)
MAGNESIUM IONnon-polymer24.31Chemie (MG)
PubChem (888)
38OA, PA, QA
(N)
ZINC IONnon-polymer65.43Chemie (ZN)
PubChem (32051)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains37
Total formula weight2173084.7
Non-Polymers*Number of molecules6
Total formula weight1403.7
All*Total formula weight2174488.5
*Water molecules are not included.

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PDB entries from 2026-09-30

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