9RM2
BKPyV VP1 IN COMPLEX WITH 319C07-FAB
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, D, G, J, M (H, A, D, G, M) | 319C07 antibody heavy chain, Fab fragment | polymer | 223 | 24208.1 | 5 | Homo sapiens | ||
2 | B, E, H, K, N (L, B, E, J, N) | 319C07 antibody light chain, Fab fragment | polymer | 215 | 23297.9 | 5 | Homo sapiens | ||
3 | C, F, I, L, O (P, C, F, K, O) | Major capsid protein VP1 | polymer | 300 | 32965.4 | 5 | UniProt (P03088) | Betapolyomavirus hominis | Major structural protein VP1 |
4 | AA, CB, IA, KB, P... (A, K, C, M, H...) | CHLORIDE ION | non-polymer | 35.5 | 9 | Chemie (CL) | |||
5 | CA, DA, EA, JA, MB... (B, C, M, H, E...) | TRIETHYLENE GLYCOL | non-polymer | 150.2 | 9 | Chemie (PGE) | |||
6 | AB, FB, GA, GB, HA... (J, K, B, C, D...) | 1,2-ETHANEDIOL | non-polymer | 62.1 | 23 | Chemie (EDO) | |||
7 | BA, LB, RB, SB, U... (B, M, N, L, P) | TETRAETHYLENE GLYCOL | non-polymer | 194.2 | 6 | Chemie (PG4) | |||
8 | V, YA (L, J) | 1-METHOXY-2-[2-(2-METHOXY-ETHOXY]-ETHANE | non-polymer | 178.2 | 2 | Chemie (PG5) | |||
9 | DB, EB, FA, NA, SA... (K, B, D, E, N...) | DI(HYDROXYETHYL)ETHER | non-polymer | 106.1 | 9 | Chemie (PEG) | |||
10 | WA (G) | PENTAETHYLENE GLYCOL | non-polymer | 238.3 | 1 | Chemie (1PE) | |||
11 | BB (J) | HEXAETHYLENE GLYCOL | non-polymer | 282.3 | 1 | Chemie (P6G) | |||
12 | AC, BC, CC, DC, EC... (A, B, C, D, E...) | water | water | 18.0 | 2156 | Chemie (HOH) |
Sequence modifications
P, C, F, K, O: -24 - 275 (UniProt: P03088)
PDB | External Database | Details |
---|---|---|
Ser 80 | Cys 105 | engineered mutation |
Asp 133 | Glu 158 | variant |
Thr 146 | Ser 171 | variant |
Thr 194 | Ala 219 | variant |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 15 |
Total formula weight | 402356.9 | |
Non-Polymers* | Number of molecules | 60 |
Total formula weight | 6095.7 | |
All* | Total formula weight | 408452.6 |