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9R8O

Primed-state RyR1 in 0.05% POPC micelles, in complex with a nanobody and FKBP

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, D, G, J
(K, A, D, G)
Nanobody 9657polymer12613783.14Lama glama
2B, E, H, K
(L, B, E, H)
Peptidyl-prolyl cis-trans isomerase FKBP1Bpolymer10711667.34UniProt (Q8HYX6)
Pfam (PF00254)
Oryctolagus cuniculus (rabbit)PPIase FKBP1B,12.6 kDa FK506-binding protein,12.6 kDa FKBP,FKBP-12.6,FK506-binding protein 1B,FKBP-1B,Immunophilin FKBP12.6,Rotamase
3C, F, I, L
(J, C, F, I)
Ryanodine receptor 1polymer5027564931.84UniProt (P11716)
Pfam (PF21119)
Pfam (PF01365)
Pfam (PF02026)
Pfam (PF08454)
Pfam (PF06459)
Pfam (PF00520)
Pfam (PF08709)
Pfam (PF02815)
Pfam (PF00622)
Oryctolagus cuniculus (rabbit)RYR-1,RyR1,Skeletal muscle calcium release channel,Skeletal muscle ryanodine receptor,Skeletal muscle-type ryanodine receptor,Type 1 ryanodine receptor
4BA, HB, M, QA
(C, I, J, F)
ADENOSINE-5'-TRIPHOSPHATEnon-polymer507.24Chemie (ATP)
5CA, IB, N, RA
(C, I, J, F)
CAFFEINEnon-polymer194.24Chemie (CFF)
6DA, JB, O, SA
(C, I, J, F)
CALCIUM IONnon-polymer40.14Chemie (CA)
7AA, AB, BB, CB, DB...
(C, F, I, J)
(2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphatenon-polymer760.140Chemie (POV)
8KA, PB, U, YA
(C, I, J, F)
ZINC IONnon-polymer65.44Chemie (ZN)
Sequence modifications
L, B, E, H: 1 - 107 (UniProt: Q8HYX6)
PDBExternal DatabaseDetails
Asp 100Gly 101conflict
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains12
Total formula weight2361528.7
Non-Polymers*Number of molecules56
Total formula weight33630.5
All*Total formula weight2395159.2
*Water molecules are not included.

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PDB entries from 2026-01-28

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