9QW4
Crystal structure of human lung surfactant protein D trimeric fragment with bound synthetic PhosII-HepII-HepI ligand
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C (A, B, C) | Pulmonary surfactant-associated protein D | polymer | 177 | 18835.0 | 3 | UniProt (P35247) Pfam (PF01391) Pfam (PF09006) Pfam (PF00059) | Homo sapiens (human) | SP-D,Collectin-7,Lung surfactant protein D |
| 2 | D, E, F, G, H... (A, B, C) | CALCIUM ION | non-polymer | 40.1 | 9 | Chemie (CA) PubChem (271) | |||
| 3 | J (B) | [(2~{R},3~{S},4~{R},5~{S},6~{S})-2-[(1~{S})-1,2-bis(oxidanyl)ethyl]-6-[(2~{R},3~{R},4~{S},5~{S},6~{S})-2-[(1~{S})-1,2-bis(oxidanyl)ethyl]-3,5-bis(oxidanyl)-6-[2-[4-[2,2,2-tris(fluoranyl)ethanoylamino]phenyl]ethoxy]oxan-4-yl]oxy-4,5-bis(oxidanyl)oxan-3-yl] dihydrogen phosphate | non-polymer | 697.5 | 1 | Chemie (A1JBS) | |||
| 4 | N (C) | L-glycero-alpha-D-manno-heptopyranose | non-polymer | 210.2 | 1 | Chemie (GMH) PubChem (16217703) PubChem (21120522) PubChem (21120523) PubChem (25021704) PubChem (25323127) PubChem (25323128) PubChem (25323129) PubChem (25323130) PubChem (45039356) PubChem (53681435) PubChem (53681436) PubChem (53681437) PubChem (53681438) PubChem (53681439) PubChem (46937000) PubChem (67594286) PubChem (67612895) PubChem (67613034) PubChem (67613262) PubChem (68663294) PubChem (68875807) PubChem (69188119) PubChem (69534922) PubChem (69978571) PubChem (70006157) PubChem (70008427) PubChem (71317125) PubChem (71317126) PubChem (67814152) PubChem (125414) PubChem (245622) PubChem (91538020) PubChem (91849732) PubChem (96361163) PubChem (91858813) PubChem (92229747) PubChem (92229748) PubChem (92229749) PubChem (92229750) PubChem (92843727) PubChem (92843728) PubChem (93483189) PubChem (10130518) PubChem (132935719) PubChem (96361162) PubChem (96361164) PubChem (102191387) PubChem (119057692) PubChem (122379815) PubChem (10104537) PubChem (10420631) PubChem (124302133) PubChem (10954800) PubChem (11543024) PubChem (124708048) PubChem (124708115) PubChem (13174980) PubChem (13174983) PubChem (13174986) PubChem (126544033) PubChem (129406310) PubChem (131886387) PubChem (133620692) PubChem (133624518) PubChem (134850595) PubChem (156614290) PubChem (162906532) PubChem (162906533) PubChem (162906534) PubChem (162906535) PubChem (164665849) PubChem (168361484) PubChem (168365671) PubChem (168367562) PubChem (168369229) PubChem (171370645) PubChem (172638968) PubChem (172641949) | |||
| 5 | O, P, Q (A, B, C) | water | water | 18.0 | 303 | Chemie (HOH) |
Sequence modifications
A, B, C: 181 - 355 (UniProt: P35247)
| PDB | External Database | Details |
|---|---|---|
| Gly 179 | - | expression tag |
| Ser 180 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 3 |
| Total formula weight | 56504.9 | |
| Non-Polymers* | Number of molecules | 11 |
| Total formula weight | 1268.4 | |
| All* | Total formula weight | 57773.3 |
