9QBL
Crystal structure of Xanthobacter autotrophicus SPARDA mutant lacking DREN nuclease domains
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, C (A, C) | DUF4365 domain-containing protein | polymer | 321 | 37138.7 | 2 | UniProt (A7ICE8) | Xanthobacter autotrophicus Py2 | |
| 2 | B, D (B, D) | Protein argonaute | polymer | 482 | 53900.3 | 2 | UniProt (A7ICE9) | Xanthobacter autotrophicus Py2 | |
| 3 | E, K, U, Y, Z (A, B, C, D) | ACETIC ACID | non-polymer | 60.1 | 5 | Chemie (ACY) | |||
| 4 | DA, F, G, M, N... (D, A, B, C) | GLYCEROL | non-polymer | 92.1 | 7 | Chemie (GOL) | |||
| 5 | H (A) | 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL | non-polymer | 122.1 | 1 | Chemie (TRS) | |||
| 6 | EA, I, P, Q, R (D, A, B) | DI(HYDROXYETHYL)ETHER | non-polymer | 106.1 | 5 | Chemie (PEG) | |||
| 7 | J, T, X (A, B, C) | CHLORIDE ION | non-polymer | 35.5 | 3 | Chemie (CL) | |||
| 8 | AA, BA, CA, L, V (D, B, C) | BETA-MERCAPTOETHANOL | non-polymer | 78.1 | 5 | Chemie (BME) | |||
| 9 | FA, S (D, B) | D(-)-TARTARIC ACID | non-polymer | 150.1 | 2 | Chemie (TAR) | |||
| 10 | GA, HA, IA, JA (A, B, C, D) | water | water | 18.0 | 1228 | Chemie (HOH) |
Sequence modifications
A, C: 153 - 444 (UniProt: A7ICE8)
| PDB | External Database | Details |
|---|---|---|
| Mse 124 | - | initiating methionine |
| Ala 125 | - | expression tag |
| Gly 126 | - | expression tag |
| Ser 127 | - | expression tag |
| His 128 | - | expression tag |
| His 129 | - | expression tag |
| His 130 | - | expression tag |
| His 131 | - | expression tag |
| His 132 | - | expression tag |
| His 133 | - | expression tag |
| Gly 134 | - | expression tag |
| Mse 135 | - | expression tag |
| Ala 136 | - | expression tag |
| Ser 137 | - | expression tag |
| Mse 138 | - | expression tag |
| Thr 139 | - | expression tag |
| Gly 140 | - | expression tag |
| Gly 141 | - | expression tag |
| Gln 142 | - | expression tag |
| Gln 143 | - | expression tag |
| Mse 144 | - | expression tag |
| Gly 145 | - | expression tag |
| Arg 146 | - | expression tag |
| Ser 147 | - | expression tag |
| Gly 148 | - | expression tag |
| Trp 149 | - | expression tag |
| Glu 150 | - | expression tag |
| Leu 151 | - | expression tag |
| Gln 152 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 4 |
| Total formula weight | 182078.0 | |
| Non-Polymers* | Number of molecules | 28 |
| Total formula weight | 2394.9 | |
| All* | Total formula weight | 184472.8 |
