9PDJ

Composite map of open form of PIC-Med-SWI/SNF

This is a non-PDB format compatible entry.

Entity

Entity ID	Chain ID	Description	Type	Chain length	Formula weight	Number of molecules	DB Name (Accession)	Biological source	Descriptive keywords
1	A, KB (A0, B0)	General transcription and DNA repair factor IIH helicase subunit XPD/RAD3	polymer	778	89899.0	2	UniProt (P06839)	Saccharomyces cerevisiae (brewer's yeast)	TFIIH subunit XPD,DNA 5'-3' helicase RAD3,DNA repair helicase RAD3,RNA polymerase II transcription factor B subunit RAD3,TFB subunit RAD3
2	B, LB (A1, B1)	General transcription and DNA repair factor IIH subunit TFB1	polymer	642	72993.3	2	UniProt (P32776)	Saccharomyces cerevisiae (brewer's yeast)	TFIIH subunit TFB1,RNA polymerase II transcription factor B 73 kDa subunit,RNA polymerase II transcription factor B p73 subunit,RNA polymerase II transcription factor B subunit 1
3	C, MB (A2, B2)	General transcription and DNA repair factor IIH subunit TFB2	polymer	513	58602.3	2	UniProt (Q02939)	Saccharomyces cerevisiae (brewer's yeast)	TFIIH subunit TFB2,RNA polymerase II transcription factor B 52 kDa subunit,RNA polymerase II transcription factor B p52 subunit,RNA polymerase II transcription factor B subunit 2
4	D, NB (A3, B3)	RNA polymerase II transcription factor B subunit 3	polymer	321	38188.4	2	UniProt (Q03290)	Saccharomyces cerevisiae (brewer's yeast)	RNA polymerase II transcription factor B 38 kDa subunit,RNA polymerase II transcription factor B p38 subunit
5	E, OB (A4, B4)	General transcription and DNA repair factor IIH subunit TFB4	polymer	338	37506.4	2	UniProt (Q12004)	Saccharomyces cerevisiae (brewer's yeast)	TFIIH subunit TFB4,RNA polymerase II transcription factor B 34 kDa subunit,RNA polymerase II transcription factor B p34 subunit,RNA polymerase II transcription factor B subunit 4
6	F, PB (A5, B5)	General transcription and DNA repair factor IIH subunit TFB5	polymer	72	8243.5	2	UniProt (Q3E7C1)	Saccharomyces cerevisiae (brewer's yeast)	TFIIH subunit TFB5,RNA polymerase II transcription factor B subunit 5
7	G, QB (A6, B6)	General transcription and DNA repair factor IIH subunit SSL1	polymer	461	52370.0	2	UniProt (Q04673)	Saccharomyces cerevisiae (brewer's yeast)	TFIIH subunit SSL1,RNA polymerase II transcription factor B subunit SSL1,TFB subunit SSL1,Suppressor of stem-loop protein 1
8	H, RB (A7, B7)	General transcription and DNA repair factor IIH helicase subunit XPB	polymer	843	95461.7	2	UniProt (Q00578)	Saccharomyces cerevisiae (brewer's yeast)	TFIIH subunit XPB,DNA repair helicase RAD25,RNA polymerase II transcription factor B subunit SSL2,TFB subunit SSL2,Suppressor of stem-loop mutation 2
9	DB, I, ND, SB (A8, SF, B8, sF)	SWI/SNF chromatin-remodeling complex subunit SNF5	polymer	905	102642.2	4	UniProt (P18480)	Saccharomyces cerevisiae (brewer's yeast)	SWI/SNF complex subunit SNF5,Transcription factor TYE4,Transcription regulatory protein SNF5
10	J, TB (A9, B9)	Transcription initiation factor TFIID subunit 14	polymer	244	27473.2	2	UniProt (P35189)	Saccharomyces cerevisiae (brewer's yeast)	Actin non-complementing mutant 1,Chromosome stability protein 10,SWI/SNF chromatin-remodeling complex subunit TAF14,SWI/SNF complex 29 kDa subunit,SWI/SNF complex subunit TAF14,TBP-associated factor 14,TBP-associated factor 30 kDa,Transcription factor G 30 kDa subunit,Transcription initiation factor TFIIF 30 kDa subunit
11	HA, K, RC, UB (AA, MA, BA, mA)	DNA-directed RNA polymerase II subunit RPB1	polymer	1733	191821.6	4	UniProt (P04050)	Saccharomyces cerevisiae (brewer's yeast)	RNA polymerase II subunit 1,RNA polymerase II subunit B1,DNA-directed RNA polymerase III largest subunit,RNA polymerase II subunit B220
12	L, VB (AB, BB)	DNA-directed RNA polymerase II subunit RPB2	polymer	1224	138937.3	2	UniProt (P08518)	Saccharomyces cerevisiae (brewer's yeast)	RNA polymerase II subunit 2,B150,DNA-directed RNA polymerase II 140 kDa polypeptide
13	M, WB (AC, BC)	DNA-directed RNA polymerase II subunit RPB3	polymer	318	35330.5	2	UniProt (P16370)	Saccharomyces cerevisiae (brewer's yeast)	RNA polymerase II subunit 3,RNA polymerase II subunit B3,B44.5,DNA-directed RNA polymerase II 45 kDa polypeptide
14	N, XB (AD, BD)	DNA-directed RNA polymerase II subunit RPB4	polymer	221	25451.2	2	UniProt (P20433)	Saccharomyces cerevisiae (brewer's yeast)	RNA polymerase II subunit B4,B32,DNA-directed RNA polymerase II 32 kDa polypeptide
15	O, YB (AE, BE)	DNA-directed RNA polymerases I, II, and III subunit RPABC1	polymer	215	25117.1	2	UniProt (P20434)	Saccharomyces cerevisiae (brewer's yeast)	RNA polymerases I,II,and III subunit ABC1,ABC27,DNA-directed RNA polymerases I,and III 27 kDa polypeptide
16	P, ZB (AF, BF)	DNA-directed RNA polymerases I, II, and III subunit RPABC2	polymer	155	17931.8	2	UniProt (P20435)	Saccharomyces cerevisiae (brewer's yeast)
17	AC, Q (AG, BG)	DNA-directed RNA polymerase II subunit RPB7	polymer	171	19081.1	2	UniProt (P34087)	Saccharomyces cerevisiae (brewer's yeast)	RNA polymerase II subunit B7,B16
18	BC, R (AH, BH)	DNA-directed RNA polymerases I, II, and III subunit RPABC3	polymer	146	16525.4	2	UniProt (P20436)	Saccharomyces cerevisiae (brewer's yeast)	RNA polymerases I,II,and III subunit ABC3,ABC14.4,ABC14.5,DNA-directed RNA polymerases I,and III 14.5 kDa polypeptide
19	CC, S (AI, BI)	DNA-directed RNA polymerase II subunit RPB9	polymer	122	14308.2	2	UniProt (P27999)	Saccharomyces cerevisiae (brewer's yeast)	RNA polymerase II subunit B9,B12.6,DNA-directed RNA polymerase II 14.2 kDa polypeptide,DNA-directed RNA polymerase II subunit 9
20	DC, T (AJ, BJ)	DNA-directed RNA polymerases I, II, and III subunit RPABC5	polymer	70	8290.7	2	UniProt (P22139)	Saccharomyces cerevisiae (brewer's yeast)	RNA polymerases I,II,and III subunit ABC5,ABC10-beta,ABC8,DNA-directed RNA polymerases I,and III 8.3 kDa polypeptide
21	EC, U (AK, BK)	DNA-directed RNA polymerase II subunit RPB11	polymer	120	13633.5	2	UniProt (P38902)	Saccharomyces cerevisiae (brewer's yeast)	RNA polymerase II subunit B11,B13.6,DNA-directed RNA polymerase II 13.6 kDa polypeptide
22	FC, V (AL, BL)	DNA-directed RNA polymerases I, II, and III subunit RPABC4	polymer	70	7730.0	2	UniProt (P40422)	Saccharomyces cerevisiae (brewer's yeast)	RNA polymerases I,II,and III subunit ABC4,ABC10-alpha
23	GC, W (AM, BM)	Transcription initiation factor IIB	polymer	345	38257.3	2	UniProt (P29055)	Saccharomyces cerevisiae (brewer's yeast)	General transcription factor TFIIB,Transcription factor E
24	HC, X (AN, BN)	promoter DNA	polymer	69	21252.7	2	GenBank (173135)	Saccharomyces cerevisiae
25	IC, Y (AO, BO)	TATA-box-binding protein	polymer	240	27042.3	2	UniProt (P13393)	Saccharomyces cerevisiae (brewer's yeast)	TATA sequence-binding protein,TBP,TATA-binding factor,TATA-box factor,Transcription factor D,Transcription initiation factor TFIID TBP subunit
26	JC, Z (AQ, BQ)	Transcription initiation factor IIF subunit alpha	polymer	735	82320.6	2	UniProt (P41895)	Saccharomyces cerevisiae (brewer's yeast)	TFIIF-alpha,TFIIF large subunit,Transcription factor G 105 kDa subunit,P105
27	AA, KC (AR, BR)	Transcription initiation factor IIF subunit beta	polymer	400	46684.5	2	UniProt (P41896)	Saccharomyces cerevisiae (brewer's yeast)	TFIIF medium subunit,TFIIF-beta,Transcription factor G 54 kDa subunit
28	BA, LC (AS, BS)	Transcription elongation factor S-II	polymer	309	34903.6	2	UniProt (P07273)	Saccharomyces cerevisiae (brewer's yeast)	DNA strand transfer protein alpha,STP-alpha,DNA strand transferase 1,Pyrimidine pathway regulatory protein 2
29	CA, MC (AT, BT)	promoter DNA	polymer	69	21279.7	2	GenBank (536627)	Saccharomyces cerevisiae
30	DA, NC (AU, BU)	Transcription initiation factor IIA large subunit	polymer	286	32230.8	2	UniProt (P32773)	Saccharomyces cerevisiae (brewer's yeast)	TFIIA large subunit,TFIIA 32 kDa subunit
31	EA, OC (AV, BV)	Transcription initiation factor IIA subunit 2	polymer	122	13473.1	2	UniProt (P32774)	Saccharomyces cerevisiae (brewer's yeast)	General transcription factor IIA subunit 2,TFIIA 13.5 kDa subunit,Transcription initiation factor IIA small chain,Transcription initiation factor IIA small subunit
32	FA, PC (AW, BW)	Transcription initiation factor IIE subunit alpha	polymer	482	54804.8	2	UniProt (P36100)	Saccharomyces cerevisiae (brewer's yeast)	TFIIE-alpha,Factor A 66 kDa subunit,Transcription factor A large subunit
33	GA, QC (AX, BX)	Transcription initiation factor IIE subunit beta	polymer	328	37050.4	2	UniProt (P36145)	Saccharomyces cerevisiae (brewer's yeast)	TFIIE-beta,Factor A 43 kDa subunit,Transcription factor A small subunit
34	IA, SC (Ma, ma)	Mediator of RNA polymerase II transcription subunit 6	polymer	295	32844.7	2	UniProt (P38782)	Saccharomyces cerevisiae (brewer's yeast)	Mediator complex subunit 6
35	JA, TC (Mb, mb)	Mediator of RNA polymerase II transcription subunit 8	polymer	223	25297.2	2	UniProt (P38304)	Saccharomyces cerevisiae (brewer's yeast)	Mediator complex subunit 8
36	KA, UC (Mc, mc)	Mediator of RNA polymerase II transcription subunit 11	polymer	115	13324.2	2	UniProt (Q99278)	Saccharomyces cerevisiae (brewer's yeast)	Mediator complex subunit 11
37	LA, VC (Md, md)	Mediator of RNA polymerase II transcription subunit 17	polymer	687	78582.8	2	UniProt (P32569)	Saccharomyces cerevisiae (brewer's yeast)	Mediator complex subunit 17,Suppressor of RNA polymerase B 4
38	MA, WC (Me, me)	Mediator of RNA polymerase II transcription subunit 18	polymer	307	34316.5	2	UniProt (P32585)	Saccharomyces cerevisiae (brewer's yeast)	Mediator complex subunit 18,Suppressor of RNA polymerase B 5
39	NA, XC (Mf, mf)	Mediator of RNA polymerase II transcription subunit 20	polymer	210	22918.1	2	UniProt (P34162)	Saccharomyces cerevisiae (brewer's yeast)	Hyper-recombination suppressor protein 2,Mediator complex subunit 20,Suppressor of RNA polymerase B 2
40	OA, YC (Mg, mg)	Mediator of RNA polymerase II transcription subunit 22	polymer	121	13875.7	2	UniProt (P32570)	Saccharomyces cerevisiae (brewer's yeast)	Mediator complex subunit 22,Suppressor of RNA polymerase B 6
41	PA, ZC (Mh, mh)	Mediator of RNA polymerase II transcription subunit 4	polymer	284	32244.9	2	UniProt (Q12343)	Saccharomyces cerevisiae (brewer's yeast)	Mediator complex subunit 4
42	AD, QA (Mi, mi)	Mediator of RNA polymerase II transcription subunit 7	polymer	222	25616.1	2	UniProt (Q08278)	Saccharomyces cerevisiae (brewer's yeast)	Mediator complex subunit 7
43	BD, RA (Mj, mj)	Mediator of RNA polymerase II transcription subunit 9	polymer	149	17400.4	2	UniProt (P33308)	Saccharomyces cerevisiae (brewer's yeast)	Chromosome segregation protein 2,Mediator complex subunit 9
44	CD, SA (Mk, mk)	Mediator of RNA polymerase II transcription subunit 10	polymer	157	17927.9	2	UniProt (Q06213)	Saccharomyces cerevisiae (brewer's yeast)	Mediator complex subunit 10,Negative regulator of URS2 protein 2
45	DD, FE, TA, ZD (Ml, ml, T4, t4)	Mediator of RNA polymerase II transcription subunit 14	polymer	1082	123500.7	4	UniProt (P19263)	Saccharomyces cerevisiae (brewer's yeast)	Glucose repression regulatory protein 1,Mediator complex subunit 14
46	ED, UA (Mm, mm)	Mediator of RNA polymerase II transcription subunit 19	polymer	220	24885.3	2	UniProt (P25046)	Saccharomyces cerevisiae (brewer's yeast)	Hypoxic gene repressor protein 3,Mediator complex subunit 19,Negative regulator of URS2 protein 3,SNF1 suppressor protein 7
47	FD, VA (Mn, mn)	Mediator of RNA polymerase II transcription subunit 21	polymer	140	16093.4	2	UniProt (P47822)	Saccharomyces cerevisiae (brewer's yeast)	Mediator complex subunit 21,RNAPII complex component SRB7,Suppressor of RNA polymerase B 7
48	GD, WA (Mo, mo)	Mediator of RNA polymerase II transcription subunit 31	polymer	127	14747.7	2	UniProt (P38633)	Saccharomyces cerevisiae (brewer's yeast)	Hpr1 suppressor protein 1,Mediator complex subunit 31
49	HD, XA (Mp, mp)	Mediator of RNA polymerase II transcription subunit 1	polymer	566	64315.0	2	UniProt (Q12321)	Saccharomyces cerevisiae (brewer's yeast)	Mediator complex subunit 1
50	ID, YA (SA, sA)	Transcription regulatory protein SNF12	polymer	566	63947.6	2	UniProt (P53628)	Saccharomyces cerevisiae (brewer's yeast)	SWI/SNF complex component SWP73
51	BB, JD, LD, ZA (SB, SD, sB, sD)	SWI/SNF complex subunit SWI3	polymer	825	93034.2	4	UniProt (P32591)	Saccharomyces cerevisiae (brewer's yeast)	Transcription factor TYE2,Transcription regulatory protein SWI3
52	AB, KD (SC, sC)	Transcription regulatory protein SNF6	polymer	332	37652.6	2	UniProt (P18888)	Saccharomyces cerevisiae (brewer's yeast)	SWI/SNF complex component SNF6
53	CB, MD (SE, sE)	SWI/SNF global transcription activator complex subunit SWP82	polymer	623	70366.6	2	UniProt (P43554)	Saccharomyces cerevisiae (brewer's yeast)
54	EB, OD (SG, sG)	unsigned peptide of SWISNF	polymer	47	4591.5	2		Saccharomyces cerevisiae
55	FB, PD (SH, sH)	Transcription regulatory protein SNF2	polymer	1703	194315.1	2	UniProt (P22082)	Saccharomyces cerevisiae (brewer's yeast)	ATP-dependent helicase SNF2,Regulatory protein GAM1,Regulatory protein SWI2,SWI/SNF complex component SNF2,Transcription factor TYE3
56	GB, QD (SI, sI)	SWI/SNF chromatin-remodeling complex subunit SWI1	polymer	1314	148065.2	2	UniProt (P09547)	Saccharomyces cerevisiae (brewer's yeast)	Regulatory protein GAM3,SWI/SNF complex subunit SWI1,Transcription regulatory protein ADR6,Transcription regulatory protein SWI1
57	HB, RD (SJ, sJ)	Regulator of Ty1 transposition protein 102	polymer	157	17817.6	2	UniProt (P53330)	Saccharomyces cerevisiae (brewer's yeast)
58	IB, SD (SK, sK)	Actin-related protein 7	polymer	477	53863.0	2	UniProt (Q12406)	Saccharomyces cerevisiae (brewer's yeast)	Actin-like protein ARP7,Chromatin structure-remodeling complex protein ARP7,SWI/SNF complex component ARP7
59	JB, TD (SL, sL)	Actin-like protein ARP9	polymer	467	53131.9	2	UniProt (Q05123)	Saccharomyces cerevisiae (brewer's yeast)	Chromatin structure-remodeling complex protein ARP9,SWI/SNF complex component ARP9
60	EE, UD, YD (E3, T3, t3)	Mediator of RNA polymerase II transcription subunit 5	polymer	1132	128918.8	3	UniProt (P53114)	Saccharomyces cerevisiae (brewer's yeast)	Mediator complex subunit 5,Negative regulator of URS2 protein 1
61	BE, HE, VD (E6, T6, t6)	Mediator of RNA polymerase II transcription subunit 16	polymer	974	111423.4	3	UniProt (P32259)	Saccharomyces cerevisiae (brewer's yeast)	Global transcriptional regulator SIN4,Mediator complex subunit 16,SNF1 suppressor protein 4,SWI4 suppressor protein 5,Transcriptional silencing factor 3,YGP1 expression regulatory protein 1
62	CE, WD (T1, t1)	Mediator of RNA polymerase II transcription subunit 2	polymer	431	47754.3	2	UniProt (Q12124)	Saccharomyces cerevisiae (brewer's yeast)	Mediator complex subunit 2
63	DE, XD (T2, t2)	Mediator of RNA polymerase II transcription subunit 3	polymer	397	43116.0	2	UniProt (P40356)	Saccharomyces cerevisiae (brewer's yeast)	Hyper-recombination suppressor protein 1,Mediator complex subunit 3,Poly-glutamine domain protein 1
64	AE, GE (T5, t5)	Mediator of RNA polymerase II transcription subunit 15	polymer	1081	120432.2	2	UniProt (P19659)	Saccharomyces cerevisiae (brewer's yeast)	Autonomous replication regulatory protein 3,Basal expression activator protein 1,Defective silencing suppressor protein 4,Mediator complex subunit 15,Transcription regulatory protein GAL11,Ty insertion suppressor protein 13
65	CF, IE (B0, A0)	IRON/SULFUR CLUSTER	non-polymer		351.6	2	Chemie (SF4)
66	AF, BF, DF, EF, FF... (AS, AW, B3, B4, B6...)	ZINC ION	non-polymer		65.4	36	Chemie (ZN) PubChem (32051)
67	MF, SE (BA, AA)	MAGNESIUM ION	non-polymer		24.3	2	Chemie (MG) PubChem (888)

Contents of the asymmetric unit

Polymers	Number of chains	138
	Total formula weight	7768656.9
Non-Polymers*	Number of molecules	40
	Total formula weight	3106.6
All*	Total formula weight	7771763.6

*Water molecules are not included.