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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

9PDJ

Composite map of open form of PIC-Med-SWI/SNF

This is a non-PDB format compatible entry.
Functional Information from PROSITE/UniProt
site_idPS00014
Number of Residues4
DetailsER_TARGET Endoplasmic reticulum targeting sequence. SEEL
ChainResidueDetails
A3SER318-LEU321
site_idPS00028
Number of Residues21
DetailsZINC_FINGER_C2H2_1 Zinc finger C2H2 type domain signature. Ced..CkqeFcvdcdvfiHeil..H
ChainResidueDetails
A6CYS429-HIS449
site_idPS00351
Number of Residues50
DetailsTFIID Transcription factor TFIID repeat signature. YnPkrFaaVImRirePKttaLIFaSGKMvvtGAKseddsklAsrkyariI
ChainResidueDetails
BOTYR94-ILE143
BOTYR185-LEU234
site_idPS00387
Number of Residues7
DetailsPPASE Inorganic pyrophosphatase signature. DDDEMDI
ChainResidueDetails
AWASP471-ILE477
site_idPS00446
Number of Residues41
DetailsRNA_POL_D_30KD RNA polymerases D / 30 to 40 Kd subunits signature. NSLRRvmiaeiptlAidsVevetNtTvlaDEfIAhRLGLIP
ChainResidueDetails
ACASN31-PRO71
site_idPS00466
Number of Residues36
DetailsZF_TFIIS_1 Zinc finger TFIIS-type signature. CgkCkekkvsyyqLQTRSaDEPlttfctCea...CgnrW
ChainResidueDetails
ASCYS271-TRP306
BICYS75-PHE110
site_idPS00518
Number of Residues10
DetailsZF_RING_1 Zinc finger RING-type signature. CyHrICesCV
ChainResidueDetails
A3CYS34-VAL43
site_idPS00690
Number of Residues10
DetailsDEAH_ATP_HELICASE DEAH-box subfamily ATP-dependent helicases signature. SiVIFDEAHN
ChainResidueDetails
A0SER230-ASN239
site_idPS00782
Number of Residues16
DetailsTFIIB Transcription factor TFIIB repeat signature. GKsmeSIMAASILIGC
ChainResidueDetails
BMGLY165-CYS180
site_idPS01030
Number of Residues27
DetailsRNA_POL_M_15KD RNA polymerases M / 15 Kd subunits signature. FCRDCNNMLypredkennrllfeCrtC
ChainResidueDetails
BIPHE6-CYS32
site_idPS01110
Number of Residues14
DetailsRNA_POL_H_23KD RNA polymerases H / 23 Kd subunits signature. HELVPKHirLssDE
ChainResidueDetails
AEHIS147-GLU160
site_idPS01111
Number of Residues15
DetailsRNA_POL_K_14KD RNA polymerases K / 14 to 18 Kd subunits signature. TkYErARiLGtRAlQ
ChainResidueDetails
AFTHR86-GLN100
site_idPS01112
Number of Residues10
DetailsRNA_POL_N_8KD RNA polymerases N / 8 Kd subunits signature. IVPVrCFSCG
ChainResidueDetails
BJILE2-GLY11
site_idPS01154
Number of Residues32
DetailsRNA_POL_L_13KD RNA polymerases L / 13 to 16 Kd subunits signature. FekEdHTLgNlIraeLlndrkVlfaaYkveHP
ChainResidueDetails
BKPHE35-PRO66
Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues880
DetailsDomain: {"description":"Helicase ATP-binding","evidences":[{"source":"PROSITE-ProRule","id":"PRU00541","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI2
Number of Residues6
DetailsMotif: {"description":"DEAH box"}
ChainResidueDetails
site_idSWS_FT_FI3
Number of Residues28
DetailsBinding site: {"evidences":[{"source":"PROSITE-ProRule","id":"PRU00541","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI4
Number of Residues8
DetailsBinding site: {"evidences":[{"source":"UniProtKB","id":"P18074","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails
site_idSWS_FT_FI5
Number of Residues94
DetailsZinc finger: {"description":"RING-type","evidences":[{"source":"PROSITE-ProRule","id":"PRU00175","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI6
Number of Residues190
DetailsZinc finger: {"description":"C4-type"}
ChainResidueDetails
site_idSWS_FT_FI7
Number of Residues358
DetailsDomain: {"description":"VWFA","evidences":[{"source":"PROSITE-ProRule","id":"PRU00219","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI8
Number of Residues308
DetailsDomain: {"description":"Helicase C-terminal","evidences":[{"source":"PROSITE-ProRule","id":"PRU00542","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI9
Number of Residues6
DetailsMotif: {"description":"DEAH box","evidences":[{"source":"PROSITE-ProRule","id":"PRU00541","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI10
Number of Residues2
DetailsModified residue: {"description":"Phosphoserine","evidences":[{"source":"PubMed","id":"17330950","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails
site_idSWS_FT_FI11
Number of Residues18
DetailsCross-link: {"description":"Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin)","evidences":[{"source":"PubMed","id":"22106047","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails
site_idSWS_FT_FI12
Number of Residues12
DetailsRepeat: {"description":"3"}
ChainResidueDetails
site_idSWS_FT_FI13
Number of Residues12
DetailsRepeat: {"description":"4"}
ChainResidueDetails
site_idSWS_FT_FI14
Number of Residues12
DetailsRepeat: {"description":"5"}
ChainResidueDetails
site_idSWS_FT_FI15
Number of Residues12
DetailsRepeat: {"description":"6"}
ChainResidueDetails
site_idSWS_FT_FI16
Number of Residues12
DetailsRepeat: {"description":"7"}
ChainResidueDetails
site_idSWS_FT_FI17
Number of Residues12
DetailsRepeat: {"description":"8"}
ChainResidueDetails
site_idSWS_FT_FI18
Number of Residues12
DetailsRepeat: {"description":"9"}
ChainResidueDetails
site_idSWS_FT_FI19
Number of Residues12
DetailsRepeat: {"description":"10"}
ChainResidueDetails
site_idSWS_FT_FI20
Number of Residues12
DetailsRepeat: {"description":"11"}
ChainResidueDetails
site_idSWS_FT_FI21
Number of Residues12
DetailsRepeat: {"description":"12"}
ChainResidueDetails
site_idSWS_FT_FI22
Number of Residues24
DetailsRegion: {"description":"Lid loop"}
ChainResidueDetails
site_idSWS_FT_FI23
Number of Residues34
DetailsRegion: {"description":"Rudder loop"}
ChainResidueDetails
site_idSWS_FT_FI24
Number of Residues24
DetailsRegion: {"description":"Bridging helix"}
ChainResidueDetails
site_idSWS_FT_FI25
Number of Residues22
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"23151482","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"25652824","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"4BBR","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4V1M","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails
site_idSWS_FT_FI26
Number of Residues22
DetailsRegion: {"description":"Fork loop 1"}
ChainResidueDetails
site_idSWS_FT_FI27
Number of Residues26
DetailsBinding site: {}
ChainResidueDetails
site_idSWS_FT_FI28
Number of Residues2
DetailsModified residue: {"description":"Phosphoserine","evidences":[{"source":"PubMed","id":"17330950","evidenceCode":"ECO:0007744"},{"source":"PubMed","id":"18407956","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails
site_idSWS_FT_FI29
Number of Residues154
DetailsRegion: {"description":"Leucine-zipper"}
ChainResidueDetails
site_idSWS_FT_FI30
Number of Residues46
DetailsRegion: {"description":"Non-specific ssDNA binding","evidences":[{"evidenceCode":"ECO:0000250"}]}
ChainResidueDetails
site_idSWS_FT_FI31
Number of Residues2
DetailsModified residue: {"description":"N-acetylserine","evidences":[{"source":"PubMed","id":"22814378","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails
site_idSWS_FT_FI32
Number of Residues106
DetailsZinc finger: {"description":"C4-type","evidences":[{"evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI33
Number of Residues160
DetailsZinc finger: {"description":"TFIIS-type","evidences":[{"source":"PROSITE-ProRule","id":"PRU00472","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI34
Number of Residues8
DetailsBinding site: {"evidences":[{"source":"PROSITE-ProRule","id":"PRU10145","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"11313498","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"11805306","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"15537538","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"11313499","evidenceCode":"ECO:0000305"}]}
ChainResidueDetails
site_idSWS_FT_FI35
Number of Residues8
DetailsBinding site: {"evidences":[{"source":"PROSITE-ProRule","id":"PRU00472","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"11313498","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"11805306","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"15537538","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"11313499","evidenceCode":"ECO:0000305"}]}
ChainResidueDetails
site_idSWS_FT_FI36
Number of Residues8
DetailsModified residue: {"description":"Phosphoserine","evidences":[{"source":"PubMed","id":"18407956","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails
site_idSWS_FT_FI37
Number of Residues8
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"15537538","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"1TWF","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails
site_idSWS_FT_FI38
Number of Residues306
DetailsRepeat: {"description":"2"}
ChainResidueDetails
site_idSWS_FT_FI39
Number of Residues66
DetailsZinc finger: {"description":"TFIIB-type","evidences":[{"source":"PROSITE-ProRule","id":"PRU00469","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI40
Number of Residues8
DetailsBinding site: {"evidences":[{"source":"PROSITE-ProRule","id":"PRU00469","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI41
Number of Residues152
DetailsRepeat: {"description":"1"}
ChainResidueDetails
site_idSWS_FT_FI42
Number of Residues232
DetailsDomain: {"description":"TFIIS central","evidences":[{"source":"PROSITE-ProRule","id":"PRU00651","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI43
Number of Residues8
DetailsBinding site: {"evidences":[{"source":"PROSITE-ProRule","id":"PRU00472","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI44
Number of Residues148
DetailsDNA binding: {"description":"TFIIE beta","evidences":[{"source":"PROSITE-ProRule","id":"PRU00682","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI45
Number of Residues132
DetailsCoiled coil: {"evidences":[{"evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI46
Number of Residues82
DetailsMotif: {"description":"Nuclear localization signal","evidences":[{"evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI47
Number of Residues2
DetailsModified residue: {"description":"Phosphoserine","evidences":[{"source":"PubMed","id":"18407956","evidenceCode":"ECO:0007744"},{"source":"PubMed","id":"19779198","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails
site_idSWS_FT_FI48
Number of Residues388
DetailsDomain: {"description":"SWIRM","evidences":[{"source":"PROSITE-ProRule","id":"PRU00247","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI49
Number of Residues204
DetailsDomain: {"description":"SANT","evidences":[{"source":"PROSITE-ProRule","id":"PRU00624","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI50
Number of Residues2
DetailsModified residue: {"description":"Phosphothreonine","evidences":[{"source":"PubMed","id":"18407956","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails
site_idSWS_FT_FI51
Number of Residues2
DetailsModified residue: {"description":"Phosphoserine","evidences":[{"source":"PubMed","id":"19779198","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails
site_idSWS_FT_FI52
Number of Residues2
DetailsModified residue: {"description":"N-acetylmethionine","evidences":[{"source":"PubMed","id":"22814378","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails
Catalytic Information from CSA
site_idMCSA1
Number of Residues1
DetailsM-CSA 788
ChainResidueDetails
site_idMCSA2
Number of Residues1
DetailsM-CSA 788
ChainResidueDetails
site_idMCSA3
Number of Residues
DetailsM-CSA 788
ChainResidueDetails
site_idMCSA4
Number of Residues3
DetailsM-CSA 788
ChainResidueDetails

260896

PDB entries from 2026-10-14

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