9NYP
Cryo-EM structure of NVL bound the the MM927 inhibitor
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C, D, E... (A, B, C, D, E...) | Nuclear valosin-containing protein-like | polymer | 856 | 95182.0 | 6 | UniProt (O15381) Pfam (PF16725) Pfam (PF00004) Pfam (PF17862) | Homo sapiens (human) | NVLp,Nuclear VCP-like protein |
| 2 | G (P) | polypeptide substrate mimic | polymer | 24 | 3333.5 | 1 | unidentified | ||
| 3 | H, I, L, M, P... (A, B, C, D, E) | ADENOSINE-5'-TRIPHOSPHATE | non-polymer | 507.2 | 9 | Chemie (ATP) | |||
| 4 | J, K, N, O, R... (A, B, C, D) | MAGNESIUM ION | non-polymer | 24.3 | 8 | Chemie (MG) PubChem (888) | |||
| 5 | Y (E) | ADENOSINE-5'-DIPHOSPHATE | non-polymer | 427.2 | 1 | Chemie (ADP) | |||
| 6 | Z (E) | N-[10-(but-2-yn-1-yl)-3-fluoro-11-oxo-10,11-dihydrodibenzo[b,f][1,4]thiazepin-7-yl]-3-methyl-2-oxo-2,3-dihydro-1,3-benzoxazole-5-carboxamide | non-polymer | 487.5 | 1 | Chemie (A1B7F) PubChem (172627353) | |||
| 7 | AA, BA, CA, DA (A, B, C, D) | water | water | 18.0 | 24 | Chemie (HOH) |
Sequence modifications
A, B, C, D, E, F: 1 - 856 (UniProt: O15381)
| PDB | External Database | Details |
|---|---|---|
| Gln 365 | Glu 365 | engineered mutation |
| Gln 682 | Glu 682 | engineered mutation |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 7 |
| Total formula weight | 574425.5 | |
| Non-Polymers* | Number of molecules | 19 |
| Total formula weight | 5673.8 | |
| All* | Total formula weight | 580099.3 |
