9NQ5
D-Ornithine/D-lysine decarboxylase C387A complexed with HEPES, putrescine, and D-ornithine
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | D-ornithine/D-lysine decarboxylase | polymer | 478 | 54372.2 | 1 | UniProt (Q8ZNC4) Pfam (PF00278) Pfam (PF02784) | Salmonella enterica subsp. enterica serovar Typhimurium | D-Orn/D-Lys decarboxylase,DOKDC |
| 2 | B (B) | D-ornithine/D-lysine decarboxylase | polymer | 478 | 54144.1 | 1 | UniProt (Q8ZNC4) Pfam (PF00278) Pfam (PF02784) | Salmonella enterica subsp. enterica serovar Typhimurium | D-Orn/D-Lys decarboxylase,DOKDC |
| 3 | C (A) | POTASSIUM ION | non-polymer | 39.1 | 1 | Chemie (K) PubChem (813) | |||
| 4 | D, H, P, W, X (A, B) | CHLORIDE ION | non-polymer | 35.5 | 5 | Chemie (CL) PubChem (312) | |||
| 5 | E, L, M, Q, U... (A, B) | DIMETHYL SULFOXIDE | non-polymer | 78.1 | 6 | Chemie (DMS) PubChem (679) | |||
| 6 | F, T (A, B) | 1,4-DIAMINOBUTANE | non-polymer | 88.2 | 2 | Chemie (PUT) PubChem (1045) | |||
| 7 | G, Y, Z (A, B) | GLYCEROL | non-polymer | 92.1 | 3 | Chemie (GOL) PubChem (753) | |||
| 8 | I (A) | 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID | non-polymer | 238.3 | 1 | Chemie (EPE) PubChem (23831) | |||
| 9 | J, N (A, B) | 1,2-ETHANEDIOL | non-polymer | 62.1 | 2 | Chemie (EDO) | |||
| 10 | K, O (A, B) | SODIUM ION | non-polymer | 23.0 | 2 | Chemie (NA) PubChem (923) | |||
| 11 | R (B) | 4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE | non-polymer | 248.2 | 1 | Chemie (PMP) PubChem (1053) | |||
| 12 | S (B) | D-ORNITHINE | non-polymer | 132.2 | 1 | Chemie (ORD) | |||
| 13 | AA, BA (A, B) | water | water | 18.0 | 803 | Chemie (HOH) |
Sequence modifications
A: 1 - 465 (UniProt: Q8ZNC4)
B: 1 - 465 (UniProt: Q8ZNC4)
| PDB | External Database | Details |
|---|---|---|
| Ala 387 | Cys 387 | engineered mutation |
| Leu 466 | - | expression tag |
| Leu 467 | - | expression tag |
| Ala 468 | - | expression tag |
| Ala 469 | - | expression tag |
| Ala 470 | - | expression tag |
| Leu 471 | - | expression tag |
| Glu 472 | - | expression tag |
| His 473 | - | expression tag |
| His 474 | - | expression tag |
| His 475 | - | expression tag |
| His 476 | - | expression tag |
| His 477 | - | expression tag |
| His 478 | - | expression tag |
| PDB | External Database | Details |
|---|---|---|
| Ala 387 | Cys 387 | engineered mutation |
| Leu 466 | - | expression tag |
| Leu 467 | - | expression tag |
| Ala 468 | - | expression tag |
| Ala 469 | - | expression tag |
| Ala 470 | - | expression tag |
| Leu 471 | - | expression tag |
| Glu 472 | - | expression tag |
| His 473 | - | expression tag |
| His 474 | - | expression tag |
| His 475 | - | expression tag |
| His 476 | - | expression tag |
| His 477 | - | expression tag |
| His 478 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 2 |
| Total formula weight | 108516.3 | |
| Non-Polymers* | Number of molecules | 24 |
| Total formula weight | 1926.5 | |
| All* | Total formula weight | 110442.8 |
