9LGO
Cryo-EM structure of the SPATA5-SPATA5L1-CINP-C1orf109 complex
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, G, H, J (A, E, D, B) | ATPase family gene 2 protein homolog A | polymer | 886 | 97276.5 | 4 | UniProt (Q8NB90) Pfam (PF00004) Pfam (PF17862) | Homo sapiens (human) | AFG2 AAA ATPase homolog A,Ribosome biogenesis protein SPATA5,Spermatogenesis-associated factor protein,Spermatogenesis-associated protein 5 |
| 2 | B, C (J, I) | Cyclin-dependent kinase 2-interacting protein | polymer | 242 | 27421.1 | 2 | UniProt (Q9BW66) | Homo sapiens (human) | CDK2-interacting protein |
| 3 | D, E (H, G) | cDNA FLJ55172 | polymer | 275 | 31592.3 | 2 | UniProt (B4DRQ5) Pfam (PF15011) | Homo sapiens (human) | C1orf109(Long isoform) |
| 4 | F, I (F, C) | ATPase family gene 2 protein homolog B | polymer | 749 | 80409.7 | 2 | UniProt (Q9BVQ7) Pfam (PF00004) Pfam (PF17862) | Homo sapiens (human) | AFG2 AAA ATPase homolog B,Ribosome biogenesis protein SPATA5L1,Spermatogenesis-associated protein 5-like protein 1 |
| 5 | K, L, M, N, O... (A, F, E, D, C...) | ADENOSINE-5'-TRIPHOSPHATE | non-polymer | 507.2 | 8 | Chemie (ATP) | |||
| 6 | R (C) | MAGNESIUM ION | non-polymer | 24.3 | 1 | Chemie (MG) |
Sequence modifications
A, E, D, B: 1 - 886 (UniProt: Q8NB90)
J, I: 1 - 212 (UniProt: Q9BW66)
H, G: 1 - 265 (UniProt: B4DRQ5)
| PDB | External Database | Details |
|---|---|---|
| Gln 454 | Glu 454 | conflict |
| Gln 728 | Glu 728 | conflict |
| PDB | External Database | Details |
|---|---|---|
| Met -29 | - | initiating methionine |
| Trp -28 | - | expression tag |
| Ser -27 | - | expression tag |
| His -26 | - | expression tag |
| Pro -25 | - | expression tag |
| Gln -24 | - | expression tag |
| Phe -23 | - | expression tag |
| Glu -22 | - | expression tag |
| Lys -21 | - | expression tag |
| Gly -20 | - | expression tag |
| Gly -19 | - | expression tag |
| Gly -18 | - | expression tag |
| Ser -17 | - | expression tag |
| Gly -16 | - | expression tag |
| Gly -15 | - | expression tag |
| Gly -14 | - | expression tag |
| Ser -13 | - | expression tag |
| Gly -12 | - | expression tag |
| Gly -11 | - | expression tag |
| Ser -10 | - | expression tag |
| Ala -9 | - | expression tag |
| Trp -8 | - | expression tag |
| Ser -7 | - | expression tag |
| His -6 | - | expression tag |
| Pro -5 | - | expression tag |
| Gln -4 | - | expression tag |
| Phe -3 | - | expression tag |
| Glu -2 | - | expression tag |
| Lys -1 | - | expression tag |
| Gly 0 | - | expression tag |
| PDB | External Database | Details |
|---|---|---|
| Met -9 | - | initiating methionine |
| Tyr -8 | - | expression tag |
| Pro -7 | - | expression tag |
| Tyr -6 | - | expression tag |
| Asp -5 | - | expression tag |
| Val -4 | - | expression tag |
| Pro -3 | - | expression tag |
| Asp -2 | - | expression tag |
| Tyr -1 | - | expression tag |
| Ala 0 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 10 |
| Total formula weight | 667952.0 | |
| Non-Polymers* | Number of molecules | 9 |
| Total formula weight | 4081.8 | |
| All* | Total formula weight | 672033.8 |
