Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

9LGO

Cryo-EM structure of the SPATA5-SPATA5L1-CINP-C1orf109 complex

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0000166	molecular_function	nucleotide binding
A	0005515	molecular_function	protein binding
A	0005524	molecular_function	ATP binding
A	0005737	cellular_component	cytoplasm
A	0005739	cellular_component	mitochondrion
A	0005819	cellular_component	spindle
A	0005829	cellular_component	cytosol
A	0007283	biological_process	spermatogenesis
A	0007420	biological_process	brain development
A	0016787	molecular_function	hydrolase activity
A	0016887	molecular_function	ATP hydrolysis activity
A	0030154	biological_process	cell differentiation
A	0042254	biological_process	ribosome biogenesis
A	0042273	biological_process	ribosomal large subunit biogenesis
A	0044877	molecular_function	protein-containing complex binding
A	1990275	molecular_function	preribosome binding
B	0000166	molecular_function	nucleotide binding
B	0005515	molecular_function	protein binding
B	0005524	molecular_function	ATP binding
B	0005737	cellular_component	cytoplasm
B	0005739	cellular_component	mitochondrion
B	0005819	cellular_component	spindle
B	0005829	cellular_component	cytosol
B	0007283	biological_process	spermatogenesis
B	0007420	biological_process	brain development
B	0016787	molecular_function	hydrolase activity
B	0016887	molecular_function	ATP hydrolysis activity
B	0030154	biological_process	cell differentiation
B	0042254	biological_process	ribosome biogenesis
B	0042273	biological_process	ribosomal large subunit biogenesis
B	0044877	molecular_function	protein-containing complex binding
B	1990275	molecular_function	preribosome binding
C	0000166	molecular_function	nucleotide binding
C	0005515	molecular_function	protein binding
C	0005524	molecular_function	ATP binding
C	0005634	cellular_component	nucleus
C	0005737	cellular_component	cytoplasm
C	0005819	cellular_component	spindle
C	0005829	cellular_component	cytosol
C	0016787	molecular_function	hydrolase activity
C	0016887	molecular_function	ATP hydrolysis activity
C	0030970	biological_process	retrograde protein transport, ER to cytosol
C	0031593	molecular_function	polyubiquitin modification-dependent protein binding
C	0034098	cellular_component	VCP-NPL4-UFD1 AAA ATPase complex
C	0042254	biological_process	ribosome biogenesis
C	0042273	biological_process	ribosomal large subunit biogenesis
C	0042802	molecular_function	identical protein binding
C	0043161	biological_process	proteasome-mediated ubiquitin-dependent protein catabolic process
C	0044877	molecular_function	protein-containing complex binding
C	0051228	biological_process	mitotic spindle disassembly
C	0097352	biological_process	autophagosome maturation
C	1990275	molecular_function	preribosome binding
D	0000166	molecular_function	nucleotide binding
D	0005515	molecular_function	protein binding
D	0005524	molecular_function	ATP binding
D	0005737	cellular_component	cytoplasm
D	0005739	cellular_component	mitochondrion
D	0005819	cellular_component	spindle
D	0005829	cellular_component	cytosol
D	0007283	biological_process	spermatogenesis
D	0007420	biological_process	brain development
D	0016787	molecular_function	hydrolase activity
D	0016887	molecular_function	ATP hydrolysis activity
D	0030154	biological_process	cell differentiation
D	0042254	biological_process	ribosome biogenesis
D	0042273	biological_process	ribosomal large subunit biogenesis
D	0044877	molecular_function	protein-containing complex binding
D	1990275	molecular_function	preribosome binding
E	0000166	molecular_function	nucleotide binding
E	0005515	molecular_function	protein binding
E	0005524	molecular_function	ATP binding
E	0005737	cellular_component	cytoplasm
E	0005739	cellular_component	mitochondrion
E	0005819	cellular_component	spindle
E	0005829	cellular_component	cytosol
E	0007283	biological_process	spermatogenesis
E	0007420	biological_process	brain development
E	0016787	molecular_function	hydrolase activity
E	0016887	molecular_function	ATP hydrolysis activity
E	0030154	biological_process	cell differentiation
E	0042254	biological_process	ribosome biogenesis
E	0042273	biological_process	ribosomal large subunit biogenesis
E	0044877	molecular_function	protein-containing complex binding
E	1990275	molecular_function	preribosome binding
F	0000166	molecular_function	nucleotide binding
F	0005515	molecular_function	protein binding
F	0005524	molecular_function	ATP binding
F	0005634	cellular_component	nucleus
F	0005737	cellular_component	cytoplasm
F	0005819	cellular_component	spindle
F	0005829	cellular_component	cytosol
F	0016787	molecular_function	hydrolase activity
F	0016887	molecular_function	ATP hydrolysis activity
F	0030970	biological_process	retrograde protein transport, ER to cytosol
F	0031593	molecular_function	polyubiquitin modification-dependent protein binding
F	0034098	cellular_component	VCP-NPL4-UFD1 AAA ATPase complex
F	0042254	biological_process	ribosome biogenesis
F	0042273	biological_process	ribosomal large subunit biogenesis
F	0042802	molecular_function	identical protein binding
F	0043161	biological_process	proteasome-mediated ubiquitin-dependent protein catabolic process
F	0044877	molecular_function	protein-containing complex binding
F	0051228	biological_process	mitotic spindle disassembly
F	0097352	biological_process	autophagosome maturation
F	1990275	molecular_function	preribosome binding
I	0005515	molecular_function	protein binding
I	0005634	cellular_component	nucleus
I	0006260	biological_process	DNA replication
I	0006281	biological_process	DNA repair
I	0006974	biological_process	DNA damage response
I	0042254	biological_process	ribosome biogenesis
I	0042273	biological_process	ribosomal large subunit biogenesis
I	0051301	biological_process	cell division
I	1990275	molecular_function	preribosome binding
J	0005515	molecular_function	protein binding
J	0005634	cellular_component	nucleus
J	0006260	biological_process	DNA replication
J	0006281	biological_process	DNA repair
J	0006974	biological_process	DNA damage response
J	0042254	biological_process	ribosome biogenesis
J	0042273	biological_process	ribosomal large subunit biogenesis
J	0051301	biological_process	cell division
J	1990275	molecular_function	preribosome binding

Functional Information from PROSITE/UniProt

site_id	PS00674
Number of Residues	19
Details	AAA AAA-protein family signature. VvVVgATNrpdaLDpALr.R

Chain	Residue	Details
F	VAL338-ARG356
F	VAL622-ARG640
A	VAL493-ARG511
A	VAL766-ARG784

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	56
Details	Binding site: {"evidences":[{"source":"UniProtKB","id":"P32794","evidenceCode":"ECO:0000250"}]}

Chain

Residue

Details

site_id	SWS_FT_FI2
Number of Residues	8
Details	Cross-link: {"description":"Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2)","evidences":[{"source":"PubMed","id":"28112733","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

site_id	SWS_FT_FI3
Number of Residues	2
Details	Binding site: {"evidences":[{"source":"PubMed","id":"38554706","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"8CIH","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

site_id	SWS_FT_FI4
Number of Residues	28
Details	Binding site: {"evidences":[{"evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

		Sequence (fasta)
		PDBx/mmCIF
		PDBML format (no-atom)
		PDB format (full)
		Validation report (PDF)