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9LGO

Cryo-EM structure of the SPATA5-SPATA5L1-CINP-C1orf109 complex

Functional Information from GO Data
ChainGOidnamespacecontents
A0000166molecular_functionnucleotide binding
A0005515molecular_functionprotein binding
A0005524molecular_functionATP binding
A0005737cellular_componentcytoplasm
A0005739cellular_componentmitochondrion
A0005819cellular_componentspindle
A0005829cellular_componentcytosol
A0005856cellular_componentcytoskeleton
A0007283biological_processspermatogenesis
A0007420biological_processbrain development
A0016787molecular_functionhydrolase activity
A0016887molecular_functionATP hydrolysis activity
A0030154biological_processcell differentiation
A0042254biological_processribosome biogenesis
A0042273biological_processribosomal large subunit biogenesis
A0044877molecular_functionprotein-containing complex binding
A1990275molecular_functionpreribosome binding
B0000166molecular_functionnucleotide binding
B0005515molecular_functionprotein binding
B0005524molecular_functionATP binding
B0005737cellular_componentcytoplasm
B0005739cellular_componentmitochondrion
B0005819cellular_componentspindle
B0005829cellular_componentcytosol
B0005856cellular_componentcytoskeleton
B0007283biological_processspermatogenesis
B0007420biological_processbrain development
B0016787molecular_functionhydrolase activity
B0016887molecular_functionATP hydrolysis activity
B0030154biological_processcell differentiation
B0042254biological_processribosome biogenesis
B0042273biological_processribosomal large subunit biogenesis
B0044877molecular_functionprotein-containing complex binding
B1990275molecular_functionpreribosome binding
C0000166molecular_functionnucleotide binding
C0005515molecular_functionprotein binding
C0005524molecular_functionATP binding
C0005634cellular_componentnucleus
C0005737cellular_componentcytoplasm
C0005819cellular_componentspindle
C0005829cellular_componentcytosol
C0005856cellular_componentcytoskeleton
C0016787molecular_functionhydrolase activity
C0016887molecular_functionATP hydrolysis activity
C0030970biological_processretrograde protein transport, ER to cytosol
C0031593molecular_functionpolyubiquitin modification-dependent protein binding
C0034098cellular_componentVCP-NPL4-UFD1 AAA ATPase complex
C0042254biological_processribosome biogenesis
C0042273biological_processribosomal large subunit biogenesis
C0042802molecular_functionidentical protein binding
C0043161biological_processproteasome-mediated ubiquitin-dependent protein catabolic process
C0044877molecular_functionprotein-containing complex binding
C0051228biological_processmitotic spindle disassembly
C0097352biological_processautophagosome maturation
C1990275molecular_functionpreribosome binding
D0000166molecular_functionnucleotide binding
D0005515molecular_functionprotein binding
D0005524molecular_functionATP binding
D0005737cellular_componentcytoplasm
D0005739cellular_componentmitochondrion
D0005819cellular_componentspindle
D0005829cellular_componentcytosol
D0005856cellular_componentcytoskeleton
D0007283biological_processspermatogenesis
D0007420biological_processbrain development
D0016787molecular_functionhydrolase activity
D0016887molecular_functionATP hydrolysis activity
D0030154biological_processcell differentiation
D0042254biological_processribosome biogenesis
D0042273biological_processribosomal large subunit biogenesis
D0044877molecular_functionprotein-containing complex binding
D1990275molecular_functionpreribosome binding
E0000166molecular_functionnucleotide binding
E0005515molecular_functionprotein binding
E0005524molecular_functionATP binding
E0005737cellular_componentcytoplasm
E0005739cellular_componentmitochondrion
E0005819cellular_componentspindle
E0005829cellular_componentcytosol
E0005856cellular_componentcytoskeleton
E0007283biological_processspermatogenesis
E0007420biological_processbrain development
E0016787molecular_functionhydrolase activity
E0016887molecular_functionATP hydrolysis activity
E0030154biological_processcell differentiation
E0042254biological_processribosome biogenesis
E0042273biological_processribosomal large subunit biogenesis
E0044877molecular_functionprotein-containing complex binding
E1990275molecular_functionpreribosome binding
F0000166molecular_functionnucleotide binding
F0005515molecular_functionprotein binding
F0005524molecular_functionATP binding
F0005634cellular_componentnucleus
F0005737cellular_componentcytoplasm
F0005819cellular_componentspindle
F0005829cellular_componentcytosol
F0005856cellular_componentcytoskeleton
F0016787molecular_functionhydrolase activity
F0016887molecular_functionATP hydrolysis activity
F0030970biological_processretrograde protein transport, ER to cytosol
F0031593molecular_functionpolyubiquitin modification-dependent protein binding
F0034098cellular_componentVCP-NPL4-UFD1 AAA ATPase complex
F0042254biological_processribosome biogenesis
F0042273biological_processribosomal large subunit biogenesis
F0042802molecular_functionidentical protein binding
F0043161biological_processproteasome-mediated ubiquitin-dependent protein catabolic process
F0044877molecular_functionprotein-containing complex binding
F0051228biological_processmitotic spindle disassembly
F0097352biological_processautophagosome maturation
F1990275molecular_functionpreribosome binding
I0005515molecular_functionprotein binding
I0005634cellular_componentnucleus
I0006260biological_processDNA replication
I0006281biological_processDNA repair
I0006974biological_processDNA damage response
I0042254biological_processribosome biogenesis
I0042273biological_processribosomal large subunit biogenesis
I0051301biological_processcell division
I1990275molecular_functionpreribosome binding
J0005515molecular_functionprotein binding
J0005634cellular_componentnucleus
J0006260biological_processDNA replication
J0006281biological_processDNA repair
J0006974biological_processDNA damage response
J0042254biological_processribosome biogenesis
J0042273biological_processribosomal large subunit biogenesis
J0051301biological_processcell division
J1990275molecular_functionpreribosome binding
Functional Information from PROSITE/UniProt
site_idPS00674
Number of Residues19
DetailsAAA AAA-protein family signature. VvVVgATNrpdaLDpALr.R
ChainResidueDetails
FVAL338-ARG356
FVAL622-ARG640
AVAL493-ARG511
AVAL766-ARG784

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsBINDING: BINDING => ECO:0000255
ChainResidueDetails
FGLY241
FGLY505
CGLY241
CGLY505
DGLY394
DGLY668
BGLY394
BGLY668

site_idSWS_FT_FI2
Number of Residues2
DetailsMOD_RES: N-acetylmethionine => ECO:0007744|PubMed:22814378
ChainResidueDetails
FMET1
CMET1
DTHR272
BTHR272

site_idSWS_FT_FI3
Number of Residues4
DetailsMOD_RES: Phosphoserine => ECO:0007744|PubMed:23186163
ChainResidueDetails
JSER69
JSER73
ISER69
ISER73
DSER274
DSER279
BSER274
BSER279

site_idSWS_FT_FI4
Number of Residues8
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2) => ECO:0007744|PubMed:28112733
ChainResidueDetails
ALYS859
ELYS859
DLYS859
BLYS859

237735

PDB entries from 2025-06-18

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