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9LGI

Cryo-EM structure of a type II-D CRISPR-Cas9 in complex with single-guided RNA and double-stranded DNA

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(A)
HNH nuclease domain-containing proteinpolymer76288439.41UniProt (A0A1G1G089)Nitrospirae bacterium RBG_13_39_12CRISPR-associated endonuclease Cas9/Csn1
2B
(B)
sgRNA (156-MER)polymer15650211.61Nitrospirae bacterium RBG_13_39_12
3C
(C)
DNA (41-MER)polymer4112489.11synthetic construct
4D
(D)
DNA (41-MER)polymer4112560.11synthetic construct
5E, F
(A)
ZINC IONnon-polymer65.42Chemie (ZN)
6G, H
(C, D)
waterwater18.06Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains4
Total formula weight163700.2
Non-Polymers*Number of molecules2
Total formula weight130.8
All*Total formula weight163831.0
*Water molecules are not included.

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PDB entries from 2026-01-28

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