9LE8

Coordinates of Cryo-EM structure of the Arabidopsis thaliana C2S2M2-type PSII supercomplex

This is a non-PDB format compatible entry.

Entity

Entity ID	Chain ID	Description	Type	Chain length	Formula weight	Number of molecules	DB Name (Accession)	Biological source	Descriptive keywords
1	A, C, E, G (9, AA, AC, AE)	Chlorophyll a-b binding protein, chloroplastic	polymer	266	28193.9	4	UniProt (A0A654EYS2) Pfam (PF00504)	Arabidopsis thaliana (thale cress)
2	B, F (0, AD)	Chlorophyll a-b binding protein 3, chloroplastic	polymer	243	26453.0	2	UniProt (Q9S7M0) Pfam (PF00504)	Arabidopsis thaliana (thale cress)	Light-harvesting chlorophyll B-binding protein 3,LHCB3*1,Lhcb3
3	D, H (AB, AF)	Chlorophyll a-b binding protein, chloroplastic	polymer	212	23198.3	2	UniProt (A0A178WK60) Pfam (PF00504)	Arabidopsis thaliana (thale cress)
4	DA, I (J, AJ)	Photosystem II protein D1	polymer	352	38830.1	2	UniProt (P83755) Pfam (PF00124)	Arabidopsis thaliana (thale cress)	PSII D1 protein,Photosystem II Q(B) protein
5	EA, J (O, AK)	Photosystem II CP47 reaction center protein	polymer	508	56091.8	2	UniProt (P56777) Pfam (PF00421)	Arabidopsis thaliana (thale cress)	PSII 47 kDa protein,Protein CP-47
6	FA, K (P, AL)	Photosystem II CP43 reaction center protein	polymer	459	50086.3	2	UniProt (P56778) Pfam (PF00421)	Arabidopsis thaliana (thale cress)	PSII 43 kDa protein,Protein CP-43
7	GA, L (Q, AM)	Photosystem II D2 protein	polymer	352	39444.1	2	UniProt (P56761) Pfam (PF00124)	Arabidopsis thaliana (thale cress)	PSII D2 protein,Photosystem Q(A) protein
8	HA, M (E, e)	Cytochrome b559 subunit alpha	polymer	83	9393.5	2	UniProt (P56779) Pfam (PF00283) Pfam (PF00284)	Arabidopsis thaliana (thale cress)	PSII reaction center subunit V
9	IA, N (F, f)	Cytochrome b559 subunit beta	polymer	39	4428.2	2	UniProt (P62095) Pfam (PF00283)	Arabidopsis thaliana (thale cress)	PSII reaction center subunit VI
10	BA, JA, O, PA, U... (V, p, AH, AN, AQ...)	Chlorophyll a-b binding protein 1, chloroplastic	polymer	232	24885.1	6	UniProt (P04778) Pfam (PF00504)	Arabidopsis thaliana (thale cress)	Chlorophyll a-b protein 140,CAB-140,LHCII type I CAB-1
11	KA, P (j, AO)	Photosystem II reaction center protein H	polymer	72	7575.7	2	UniProt (P56780) Pfam (PF00737)	Arabidopsis thaliana (thale cress)	PSII-H,Photosystem II 10 kDa phosphoprotein
12	LA, Q (I, i)	Photosystem II reaction center protein I	polymer	36	4170.9	2	UniProt (P62100) Pfam (PF02532)	Arabidopsis thaliana (thale cress)	PSII-I,PSII 4.8 kDa protein
13	MA, R (K, k)	Photosystem II reaction center protein K	polymer	37	4239.1	2	UniProt (P56782) Pfam (PF02533)	Arabidopsis thaliana (thale cress)	PSII-K
14	NA, S (o, AP)	Photosystem II reaction center protein L	polymer	38	4471.1	2	UniProt (P60129) Pfam (PF02419)	Arabidopsis thaliana (thale cress)	PSII-L
15	OA, T (M, m)	Photosystem II reaction center protein M	polymer	34	3783.5	2	UniProt (P62109) Pfam (PF05151)	Arabidopsis thaliana (thale cress)	PSII-M
16	QA, V (q, AR)	Chlorophyll a-b binding protein CP29.1, chloroplastic	polymer	250	27302.9	2	UniProt (Q07473) Pfam (PF00504)	Arabidopsis thaliana (thale cress)	LHCB4.1,LHCII protein 4.1
17	RA, W (v, AS)	Chlorophyll a-b binding protein CP26, chloroplastic	polymer	232	25232.8	2	UniProt (Q9XF89) Pfam (PF00504)	Arabidopsis thaliana (thale cress)	LHCB5,LHCIIc,Light-harvesting complex II protein 5
18	SA, X (AG, AT)	Photosystem II reaction center protein T	polymer	33	3825.6	2	UniProt (P61839) Pfam (PF01405)	Arabidopsis thaliana (thale cress)	PSII-T
19	TA, Y (U, u)	Photosystem II 5 kDa protein, chloroplastic	polymer	28	3178.8	2	UniProt (Q39195)	Arabidopsis thaliana (thale cress)	PSII-T,Nuclear encoded psbT,PsbTn
20	UA, Z (W, w)	Photosystem II reaction center W protein, chloroplastic	polymer	54	6036.7	2	UniProt (Q39194) Pfam (PF07123)	Arabidopsis thaliana (thale cress)	PSII 6.1 kDa protein
21	AA, VA (X, x)	(thale cress) hypothetical protein	polymer	42	4186.9	2	UniProt (A0A7G2E9B1) Pfam (PF06596)	Arabidopsis thaliana (thale cress)
22	CA, XA (AI, AV)	Photosystem II reaction center protein Z	polymer	62	6569.8	2	UniProt (P56790) Pfam (PF01737)	Arabidopsis thaliana (thale cress)	PSII-Z
23	BE, BK, BP, CB, CD... (AD, q, AN, 9, AB...)	CHLOROPHYLL B	non-polymer		907.5	95	Chemie (CHL)
24	AB, AC, AD, AF, AG... (9, 0, AB, AE, J...)	CHLOROPHYLL A	non-polymer		893.5	215	Chemie (CLA)
25	DC, DL, EC, EF, EL... (0, v, AE, AS, q...)	(3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL	non-polymer		568.9	31	Chemie (LUT)
26	AE, FL, GF, GR, LK... (AC, v, AE, AS, q...)	(1R,3R)-6-{(3E,5E,7E,9E,11E,13E,15E,17E)-18-[(1S,4R,6R)-4-HYDROXY-2,2,6-TRIMETHYL-7-OXABICYCLO[4.1.0]HEPT-1-YL]-3,7,12,16-TETRAMETHYLOCTADECA-1,3,5,7,9,11,13,15,17-NONAENYLIDENE}-1,5,5-TRIMETHYLCYCLOHEXANE-1,3-DIOL	non-polymer		600.9	11	Chemie (NEX)
27	KD, NK, OQ, PB, VF (AB, q, AR, 9, AF)	(3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL	non-polymer		600.9	5	Chemie (XAT)
28	AO, AP, EH, FC, FH... (AL, AN, O, 0, Q...)	1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE	non-polymer		723.0	22	Chemie (LHG)
29	AH, AJ, BH, CH, CN... (O, j, AK, AO, J...)	BETA-CAROTENE	non-polymer		536.9	24	Chemie (BCR)
30	XF, ZL (J, AJ)	CA-MN4-O5 CLUSTER	non-polymer		339.8	2	Chemie (OEX)
31	AM, YF (AJ, J)	FE (II) ION	non-polymer		55.8	2	Chemie (FE2)
32	BG, CG, EM, FM (J, AJ)	PHEOPHYTIN A	non-polymer		871.2	4	Chemie (PHO)
33	AI, BO, DH, FG, FN... (P, AL, O, J, AK...)	1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE	non-polymer		787.2	10	Chemie (LMG)
34	CI, CO, DJ, EJ, FP... (Q, AM, o, M, AP...)	1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL	non-polymer		795.1	8	Chemie (SQD)
35	BJ, DP, HG, JG, JM... (j, AO, J, AJ, P...)	DIGALACTOSYL DIACYL GLYCEROL (DGDG)	non-polymer		949.3	9	Chemie (DGD)
36	DO, IG (AM, J)	BICARBONATE ION	non-polymer		61.0	2	Chemie (BCT)
37	FI, GO (Q, AM)	2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE	non-polymer		749.2	2	Chemie (PL9)
38	JI, KO (F, f)	PROTOPORPHYRIN IX CONTAINING FE	non-polymer		616.5	2	Chemie (HEM)

Contents of the asymmetric unit

Polymers	Number of chains	50
	Total formula weight	959084.4
Non-Polymers*	Number of molecules	444
	Total formula weight	364254.9
All*	Total formula weight	1323339.3

*Water molecules are not included.