Loading
PDBj
English日本語简体中文繁體中文한국어
✖
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help
SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

9LE8

Coordinates of Cryo-EM structure of the Arabidopsis thaliana C2S2M2-type PSII supercomplex

This is a non-PDB format compatible entry.
Functional Information from GO Data
ChainGOidnamespacecontents
00005515molecular_functionprotein binding
00009416biological_processresponse to light stimulus
00009507cellular_componentchloroplast
00009517cellular_componentPSII associated light-harvesting complex II
00009522cellular_componentphotosystem I
00009523cellular_componentphotosystem II
00009534cellular_componentchloroplast thylakoid
00009535cellular_componentchloroplast thylakoid membrane
00009536cellular_componentplastid
00009579cellular_componentthylakoid
00009635biological_processresponse to herbicide
00009644biological_processresponse to high light intensity
00009737biological_processresponse to abscisic acid
00009768biological_processphotosynthesis, light harvesting in photosystem I
00009769biological_processphotosynthesis, light harvesting in photosystem II
00010119biological_processregulation of stomatal movement
00015979biological_processphotosynthesis
00016168molecular_functionchlorophyll binding
00019904molecular_functionprotein domain specific binding
00042651cellular_componentthylakoid membrane
00046872molecular_functionmetal ion binding
90009522cellular_componentphotosystem I
90009523cellular_componentphotosystem II
90009535cellular_componentchloroplast thylakoid membrane
90015979biological_processphotosynthesis
90016168molecular_functionchlorophyll binding
90046872molecular_functionmetal ion binding
AA0009522cellular_componentphotosystem I
AA0009523cellular_componentphotosystem II
AA0009535cellular_componentchloroplast thylakoid membrane
AA0015979biological_processphotosynthesis
AA0016168molecular_functionchlorophyll binding
AA0046872molecular_functionmetal ion binding
AC0009522cellular_componentphotosystem I
AC0009523cellular_componentphotosystem II
AC0009535cellular_componentchloroplast thylakoid membrane
AC0015979biological_processphotosynthesis
AC0016168molecular_functionchlorophyll binding
AC0046872molecular_functionmetal ion binding
AD0005515molecular_functionprotein binding
AD0009416biological_processresponse to light stimulus
AD0009507cellular_componentchloroplast
AD0009517cellular_componentPSII associated light-harvesting complex II
AD0009522cellular_componentphotosystem I
AD0009523cellular_componentphotosystem II
AD0009534cellular_componentchloroplast thylakoid
AD0009535cellular_componentchloroplast thylakoid membrane
AD0009536cellular_componentplastid
AD0009579cellular_componentthylakoid
AD0009635biological_processresponse to herbicide
AD0009644biological_processresponse to high light intensity
AD0009737biological_processresponse to abscisic acid
AD0009768biological_processphotosynthesis, light harvesting in photosystem I
AD0009769biological_processphotosynthesis, light harvesting in photosystem II
AD0010119biological_processregulation of stomatal movement
AD0015979biological_processphotosynthesis
AD0016168molecular_functionchlorophyll binding
AD0019904molecular_functionprotein domain specific binding
AD0042651cellular_componentthylakoid membrane
AD0046872molecular_functionmetal ion binding
AE0009522cellular_componentphotosystem I
AE0009523cellular_componentphotosystem II
AE0009535cellular_componentchloroplast thylakoid membrane
AE0015979biological_processphotosynthesis
AE0016168molecular_functionchlorophyll binding
AE0046872molecular_functionmetal ion binding
AG0005737cellular_componentcytoplasm
AG0009507cellular_componentchloroplast
AG0009523cellular_componentphotosystem II
AG0009535cellular_componentchloroplast thylakoid membrane
AG0015979biological_processphotosynthesis
AI0003674molecular_functionmolecular_function
AI0009507cellular_componentchloroplast
AI0009523cellular_componentphotosystem II
AI0009535cellular_componentchloroplast thylakoid membrane
AI0009536cellular_componentplastid
AI0015979biological_processphotosynthesis
AJ0003729molecular_functionmRNA binding
AJ0005506molecular_functioniron ion binding
AJ0005515molecular_functionprotein binding
AJ0009055molecular_functionelectron transfer activity
AJ0009507cellular_componentchloroplast
AJ0009523cellular_componentphotosystem II
AJ0009534cellular_componentchloroplast thylakoid
AJ0009535cellular_componentchloroplast thylakoid membrane
AJ0009536cellular_componentplastid
AJ0009579cellular_componentthylakoid
AJ0009635biological_processresponse to herbicide
AJ0010242molecular_functionoxygen evolving activity
AJ0015979biological_processphotosynthesis
AJ0016168molecular_functionchlorophyll binding
AJ0016491molecular_functionoxidoreductase activity
AJ0016682molecular_functionoxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
AJ0046872molecular_functionmetal ion binding
AK0003729molecular_functionmRNA binding
AK0005515molecular_functionprotein binding
AK0009507cellular_componentchloroplast
AK0009523cellular_componentphotosystem II
AK0009534cellular_componentchloroplast thylakoid
AK0009535cellular_componentchloroplast thylakoid membrane
AK0009536cellular_componentplastid
AK0009579cellular_componentthylakoid
AK0010207biological_processphotosystem II assembly
AK0015979biological_processphotosynthesis
AK0016168molecular_functionchlorophyll binding
AL0003729molecular_functionmRNA binding
AL0005515molecular_functionprotein binding
AL0009507cellular_componentchloroplast
AL0009523cellular_componentphotosystem II
AL0009533cellular_componentchloroplast stromal thylakoid
AL0009534cellular_componentchloroplast thylakoid
AL0009535cellular_componentchloroplast thylakoid membrane
AL0009536cellular_componentplastid
AL0009539cellular_componentphotosystem II reaction center
AL0009579cellular_componentthylakoid
AL0010287cellular_componentplastoglobule
AL0015979biological_processphotosynthesis
AL0016168molecular_functionchlorophyll binding
AL0046872molecular_functionmetal ion binding
AM0003729molecular_functionmRNA binding
AM0005506molecular_functioniron ion binding
AM0005515molecular_functionprotein binding
AM0005739cellular_componentmitochondrion
AM0009055molecular_functionelectron transfer activity
AM0009507cellular_componentchloroplast
AM0009523cellular_componentphotosystem II
AM0009534cellular_componentchloroplast thylakoid
AM0009535cellular_componentchloroplast thylakoid membrane
AM0009536cellular_componentplastid
AM0009579cellular_componentthylakoid
AM0010242molecular_functionoxygen evolving activity
AM0015979biological_processphotosynthesis
AM0016168molecular_functionchlorophyll binding
AM0016491molecular_functionoxidoreductase activity
AM0046872molecular_functionmetal ion binding
AO0003729molecular_functionmRNA binding
AO0009507cellular_componentchloroplast
AO0009523cellular_componentphotosystem II
AO0009534cellular_componentchloroplast thylakoid
AO0009535cellular_componentchloroplast thylakoid membrane
AO0009536cellular_componentplastid
AO0009579cellular_componentthylakoid
AO0009654cellular_componentphotosystem II oxygen evolving complex
AO0015979biological_processphotosynthesis
AP0003674molecular_functionmolecular_function
AP0005737cellular_componentcytoplasm
AP0009507cellular_componentchloroplast
AP0009523cellular_componentphotosystem II
AP0009534cellular_componentchloroplast thylakoid
AP0009535cellular_componentchloroplast thylakoid membrane
AP0009579cellular_componentthylakoid
AP0015979biological_processphotosynthesis
AT0005737cellular_componentcytoplasm
AT0009507cellular_componentchloroplast
AT0009523cellular_componentphotosystem II
AT0009535cellular_componentchloroplast thylakoid membrane
AT0015979biological_processphotosynthesis
AV0003674molecular_functionmolecular_function
AV0009507cellular_componentchloroplast
AV0009523cellular_componentphotosystem II
AV0009535cellular_componentchloroplast thylakoid membrane
AV0009536cellular_componentplastid
AV0015979biological_processphotosynthesis
E0005506molecular_functioniron ion binding
E0009055molecular_functionelectron transfer activity
E0009507cellular_componentchloroplast
E0009523cellular_componentphotosystem II
E0009534cellular_componentchloroplast thylakoid
E0009535cellular_componentchloroplast thylakoid membrane
E0009536cellular_componentplastid
E0009579cellular_componentthylakoid
E0015979biological_processphotosynthesis
E0046872molecular_functionmetal ion binding
F0005506molecular_functioniron ion binding
F0005739cellular_componentmitochondrion
F0009055molecular_functionelectron transfer activity
F0009507cellular_componentchloroplast
F0009523cellular_componentphotosystem II
F0009535cellular_componentchloroplast thylakoid membrane
F0009536cellular_componentplastid
F0009579cellular_componentthylakoid
F0015979biological_processphotosynthesis
F0046872molecular_functionmetal ion binding
I0005737cellular_componentcytoplasm
I0009507cellular_componentchloroplast
I0009523cellular_componentphotosystem II
I0009535cellular_componentchloroplast thylakoid membrane
I0015979biological_processphotosynthesis
J0003729molecular_functionmRNA binding
J0005506molecular_functioniron ion binding
J0005515molecular_functionprotein binding
J0009055molecular_functionelectron transfer activity
J0009507cellular_componentchloroplast
J0009523cellular_componentphotosystem II
J0009534cellular_componentchloroplast thylakoid
J0009535cellular_componentchloroplast thylakoid membrane
J0009536cellular_componentplastid
J0009579cellular_componentthylakoid
J0009635biological_processresponse to herbicide
J0010242molecular_functionoxygen evolving activity
J0015979biological_processphotosynthesis
J0016168molecular_functionchlorophyll binding
J0016491molecular_functionoxidoreductase activity
J0016682molecular_functionoxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
J0046872molecular_functionmetal ion binding
M0003674molecular_functionmolecular_function
M0005737cellular_componentcytoplasm
M0009507cellular_componentchloroplast
M0009523cellular_componentphotosystem II
M0009535cellular_componentchloroplast thylakoid membrane
M0015979biological_processphotosynthesis
O0003729molecular_functionmRNA binding
O0005515molecular_functionprotein binding
O0009507cellular_componentchloroplast
O0009523cellular_componentphotosystem II
O0009534cellular_componentchloroplast thylakoid
O0009535cellular_componentchloroplast thylakoid membrane
O0009536cellular_componentplastid
O0009579cellular_componentthylakoid
O0010207biological_processphotosystem II assembly
O0015979biological_processphotosynthesis
O0016168molecular_functionchlorophyll binding
P0003729molecular_functionmRNA binding
P0005515molecular_functionprotein binding
P0009507cellular_componentchloroplast
P0009523cellular_componentphotosystem II
P0009533cellular_componentchloroplast stromal thylakoid
P0009534cellular_componentchloroplast thylakoid
P0009535cellular_componentchloroplast thylakoid membrane
P0009536cellular_componentplastid
P0009539cellular_componentphotosystem II reaction center
P0009579cellular_componentthylakoid
P0010287cellular_componentplastoglobule
P0015979biological_processphotosynthesis
P0016168molecular_functionchlorophyll binding
P0046872molecular_functionmetal ion binding
Q0003729molecular_functionmRNA binding
Q0005506molecular_functioniron ion binding
Q0005515molecular_functionprotein binding
Q0005739cellular_componentmitochondrion
Q0009055molecular_functionelectron transfer activity
Q0009507cellular_componentchloroplast
Q0009523cellular_componentphotosystem II
Q0009534cellular_componentchloroplast thylakoid
Q0009535cellular_componentchloroplast thylakoid membrane
Q0009536cellular_componentplastid
Q0009579cellular_componentthylakoid
Q0010242molecular_functionoxygen evolving activity
Q0015979biological_processphotosynthesis
Q0016168molecular_functionchlorophyll binding
Q0016491molecular_functionoxidoreductase activity
Q0046872molecular_functionmetal ion binding
e0005506molecular_functioniron ion binding
e0009055molecular_functionelectron transfer activity
e0009507cellular_componentchloroplast
e0009523cellular_componentphotosystem II
e0009534cellular_componentchloroplast thylakoid
e0009535cellular_componentchloroplast thylakoid membrane
e0009536cellular_componentplastid
e0009579cellular_componentthylakoid
e0015979biological_processphotosynthesis
e0046872molecular_functionmetal ion binding
f0005506molecular_functioniron ion binding
f0005739cellular_componentmitochondrion
f0009055molecular_functionelectron transfer activity
f0009507cellular_componentchloroplast
f0009523cellular_componentphotosystem II
f0009535cellular_componentchloroplast thylakoid membrane
f0009536cellular_componentplastid
f0009579cellular_componentthylakoid
f0015979biological_processphotosynthesis
f0046872molecular_functionmetal ion binding
i0005737cellular_componentcytoplasm
i0009507cellular_componentchloroplast
i0009523cellular_componentphotosystem II
i0009535cellular_componentchloroplast thylakoid membrane
i0015979biological_processphotosynthesis
j0003729molecular_functionmRNA binding
j0009507cellular_componentchloroplast
j0009523cellular_componentphotosystem II
j0009534cellular_componentchloroplast thylakoid
j0009535cellular_componentchloroplast thylakoid membrane
j0009536cellular_componentplastid
j0009579cellular_componentthylakoid
j0009654cellular_componentphotosystem II oxygen evolving complex
j0015979biological_processphotosynthesis
m0003674molecular_functionmolecular_function
m0005737cellular_componentcytoplasm
m0009507cellular_componentchloroplast
m0009523cellular_componentphotosystem II
m0009535cellular_componentchloroplast thylakoid membrane
m0015979biological_processphotosynthesis
o0003674molecular_functionmolecular_function
o0005737cellular_componentcytoplasm
o0009507cellular_componentchloroplast
o0009523cellular_componentphotosystem II
o0009534cellular_componentchloroplast thylakoid
o0009535cellular_componentchloroplast thylakoid membrane
o0009579cellular_componentthylakoid
o0015979biological_processphotosynthesis
Functional Information from PROSITE/UniProt
site_idPS00244
Number of Residues27
DetailsREACTION_CENTER Photosynthetic reaction center proteins signature. NilmhPfHmlGvagvfggslfsAmHGS
ChainResidueDetails
AJASN191-SER217
AMASN191-ALA217
site_idPS00537
Number of Residues15
DetailsCYTOCHROME_B559 Cytochrome b559 subunits heme-binding site signature. ItSIRYwvIHSITIP
ChainResidueDetails
eILE14-PRO28
fILE9-PRO23
Functional Information from SwissProt/UniProt
site_idSWS_FT_FI3
Number of Residues720
DetailsTransmembrane: {"description":"Helical","evidences":[{"evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI4
Number of Residues72
DetailsBinding site: {"description":"axial binding residue","evidences":[{"source":"UniProtKB","id":"P12333","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails
site_idSWS_FT_FI5
Number of Residues102
DetailsBinding site: {"evidences":[{"evidenceCode":"ECO:0000250"}]}
ChainResidueDetails
site_idSWS_FT_FI6
Number of Residues8
DetailsBinding site: {"evidences":[{"source":"UniProtKB","id":"P07371","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails
site_idSWS_FT_FI7
Number of Residues162
DetailsTransmembrane: {"description":"Helical","evidences":[{"source":"HAMAP-Rule","id":"MF_01379","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI8
Number of Residues4
DetailsBinding site: {"description":"axial binding residue","evidences":[{"source":"HAMAP-Rule","id":"MF_01379","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI9
Number of Residues16
DetailsBinding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_01379","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI10
Number of Residues2
DetailsSite: {"description":"Tyrosine radical intermediate","evidences":[{"source":"HAMAP-Rule","id":"MF_01379","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI11
Number of Residues2
DetailsSite: {"description":"Stabilizes free radical intermediate","evidences":[{"source":"HAMAP-Rule","id":"MF_01379","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI12
Number of Residues180
DetailsTransmembrane: {"description":"Helical","evidences":[{"source":"HAMAP-Rule","id":"MF_01495","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI13
Number of Residues264
DetailsTransmembrane: {"description":"Helical","evidences":[{"source":"HAMAP-Rule","id":"MF_01496","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI14
Number of Residues2
DetailsBinding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_01496","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI15
Number of Residues170
DetailsTransmembrane: {"description":"Helical","evidences":[{"source":"HAMAP-Rule","id":"MF_01383","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI16
Number of Residues4
DetailsBinding site: {"description":"axial binding residue","evidences":[{"source":"HAMAP-Rule","id":"MF_01383","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI17
Number of Residues10
DetailsBinding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_01383","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI18
Number of Residues28
DetailsTransmembrane: {"description":"Helical","evidences":[{"source":"HAMAP-Rule","id":"MF_00642","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI19
Number of Residues2
DetailsBinding site: {"description":"axial binding residue","evidences":[{"source":"HAMAP-Rule","id":"MF_00642","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI20
Number of Residues32
DetailsTransmembrane: {"description":"Helical","evidences":[{"source":"HAMAP-Rule","id":"MF_00643","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI21
Number of Residues2
DetailsBinding site: {"description":"axial binding residue","evidences":[{"source":"HAMAP-Rule","id":"MF_00643","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI22
Number of Residues40
DetailsTransmembrane: {"description":"Helical","evidences":[{"source":"HAMAP-Rule","id":"MF_00752","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI23
Number of Residues40
DetailsTransmembrane: {"description":"Helical","evidences":[{"source":"HAMAP-Rule","id":"MF_01316","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI24
Number of Residues40
DetailsTransmembrane: {"description":"Helical","evidences":[{"source":"HAMAP-Rule","id":"MF_00441","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI25
Number of Residues40
DetailsTransmembrane: {"description":"Helical","evidences":[{"source":"HAMAP-Rule","id":"MF_01317","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI26
Number of Residues40
DetailsTransmembrane: {"description":"Helical","evidences":[{"source":"HAMAP-Rule","id":"MF_00438","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI27
Number of Residues34
DetailsBinding site: {"description":"axial binding residue","evidences":[{"evidenceCode":"ECO:0000250"}]}
ChainResidueDetails
site_idSWS_FT_FI28
Number of Residues40
DetailsTransmembrane: {"description":"Helical","evidences":[{"source":"HAMAP-Rule","id":"MF_00808","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI29
Number of Residues38
DetailsTopological domain: {"description":"Lumenal, thylakoid","evidences":[{"evidenceCode":"ECO:0000250"}]}
ChainResidueDetails
site_idSWS_FT_FI30
Number of Residues24
DetailsTopological domain: {"description":"Stromal","evidences":[{"evidenceCode":"ECO:0000250"}]}
ChainResidueDetails
site_idSWS_FT_FI32
Number of Residues80
DetailsTransmembrane: {"description":"Helical","evidences":[{"source":"HAMAP-Rule","id":"MF_00644","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

247536

PDB entries from 2026-01-14

PDB statisticsPDBj update infoContact PDBjnumon