9LDE
The complex structure of K63A/2'-p-ADPR-RNA
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B (A, B) | Probable RNA 2'-phosphotransferase | polymer | 180 | 20920.2 | 2 | UniProt (Q5JFX3) Pfam (PF01885) | Thermococcus kodakarensis (Pyrococcus kodakaraensis (strain KOD1)) | |
| 2 | C, D, E (A) | GLYCEROL | non-polymer | 92.1 | 3 | Chemie (GOL) PubChem (753) | |||
| 3 | F, H (A, B) | [[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{R},5~{R})-3,4-bis(oxidanyl)-5-phosphonooxy-oxolan-2-yl]methyl hydrogen phosphate | non-polymer | 639.3 | 2 | Chemie (HQG) PubChem (42626433) PubChem (44123526) | |||
| 4 | G, I (A, B) | ADENOSINE-3'-5'-DIPHOSPHATE | non-polymer | 427.2 | 2 | Chemie (A3P) PubChem (176478997) PubChem (46936223) PubChem (124507383) PubChem (57294977) PubChem (162468645) PubChem (92209390) PubChem (73) PubChem (159296) PubChem (11796727) PubChem (13832521) PubChem (162966793) | |||
| 5 | J, K (A, B) | water | water | 18.0 | 114 | Chemie (HOH) |
Sequence modifications
A, B: 1 - 180 (UniProt: Q5JFX3)
| PDB | External Database | Details |
|---|---|---|
| Ala 63 | Lys 63 | engineered mutation |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 2 |
| Total formula weight | 41840.3 | |
| Non-Polymers* | Number of molecules | 7 |
| Total formula weight | 2409.3 | |
| All* | Total formula weight | 44249.6 |
