9L3D
Crystal structure of endo-processive xyloglucanase Xeg5A from Aspergillus oryzae
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B (A, B) | Glycoside hydrolase superfamily | polymer | 648 | 71499.8 | 2 | UniProt (I8IVP5) | Aspergillus oryzae RIB40 | GH5 xyloglucanase |
| 2 | C (C) | alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 1073.0 | 1 | In PDB GlyTouCan (G09724ZC) | |||
| 3 | D, F (D, F) | alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 1397.2 | 2 | In PDB GlyTouCan (G83582BK) | |||
| 4 | E (E) | alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 1235.1 | 1 | In PDB GlyTouCan (G55220VL) | |||
| 5 | G, H (G, H) | alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-2)-[alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 1721.5 | 2 | In PDB GlyTouCan (G27421EI) | |||
| 6 | I, J (I, J) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 2 | In PDB GlyTouCan (G42666HT) | |||
| 7 | K, Z (A, B) | alpha-D-mannopyranose | non-polymer | 180.2 | 2 | Chemie (MAN) | |||
| 8 | AA, BA, L, M (B, A) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 4 | Chemie (NAG) | |||
| 9 | CA, DA, EA, N, O... (B, A) | GLYCEROL | non-polymer | 92.1 | 15 | Chemie (GOL) | |||
| 10 | FA, GA (A, B) | water | water | 18.0 | 892 | Chemie (HOH) |
Sequence modifications
A, B: 18 - 569 (UniProt: I8IVP5)
| PDB | External Database | Details |
|---|---|---|
| Met -70 | - | initiating methionine |
| Arg -69 | - | expression tag |
| Phe -68 | - | expression tag |
| Pro -67 | - | expression tag |
| Ser -66 | - | expression tag |
| Ile -65 | - | expression tag |
| Phe -64 | - | expression tag |
| Thr -63 | - | expression tag |
| Ala -62 | - | expression tag |
| Val -61 | - | expression tag |
| Leu -60 | - | expression tag |
| Phe -59 | - | expression tag |
| Ala -58 | - | expression tag |
| Ala -57 | - | expression tag |
| Ser -56 | - | expression tag |
| Ser -55 | - | expression tag |
| Ala -54 | - | expression tag |
| Leu -53 | - | expression tag |
| Ala -52 | - | expression tag |
| Ala -51 | - | expression tag |
| Pro -50 | - | expression tag |
| Val -49 | - | expression tag |
| Asn -48 | - | expression tag |
| Thr -47 | - | expression tag |
| Thr -46 | - | expression tag |
| Thr -45 | - | expression tag |
| Glu -44 | - | expression tag |
| Asp -43 | - | expression tag |
| Glu -42 | - | expression tag |
| Thr -41 | - | expression tag |
| Ala -40 | - | expression tag |
| Gln -39 | - | expression tag |
| Ile -38 | - | expression tag |
| Pro -37 | - | expression tag |
| Ala -36 | - | expression tag |
| Glu -35 | - | expression tag |
| Ala -34 | - | expression tag |
| Val -33 | - | expression tag |
| Ile -32 | - | expression tag |
| Gly -31 | - | expression tag |
| Tyr -30 | - | expression tag |
| Ser -29 | - | expression tag |
| Asp -28 | - | expression tag |
| Leu -27 | - | expression tag |
| Glu -26 | - | expression tag |
| Gly -25 | - | expression tag |
| Asp -24 | - | expression tag |
| Phe -23 | - | expression tag |
| Asp -22 | - | expression tag |
| Val -21 | - | expression tag |
| Ala -20 | - | expression tag |
| Val -19 | - | expression tag |
| Leu -18 | - | expression tag |
| Pro -17 | - | expression tag |
| Phe -16 | - | expression tag |
| Ser -15 | - | expression tag |
| Asn -14 | - | expression tag |
| Ser -13 | - | expression tag |
| Thr -12 | - | expression tag |
| Asn -11 | - | expression tag |
| Asn -10 | - | expression tag |
| Gly -9 | - | expression tag |
| Leu -8 | - | expression tag |
| Leu -7 | - | expression tag |
| Phe -6 | - | expression tag |
| Ile -5 | - | expression tag |
| Asn -4 | - | expression tag |
| Thr -3 | - | expression tag |
| Thr -2 | - | expression tag |
| Ile -1 | - | expression tag |
| Ala 0 | - | expression tag |
| Ser 1 | - | expression tag |
| Ile 2 | - | expression tag |
| Ala 3 | - | expression tag |
| Ala 4 | - | expression tag |
| Lys 5 | - | expression tag |
| Glu 6 | - | expression tag |
| Glu 7 | - | expression tag |
| Gly 8 | - | expression tag |
| Val 9 | - | expression tag |
| Ser 10 | - | expression tag |
| Leu 11 | - | expression tag |
| Glu 12 | - | expression tag |
| Lys 13 | - | expression tag |
| Arg 14 | - | expression tag |
| Glu 15 | - | expression tag |
| Ala 16 | - | expression tag |
| Glu 17 | - | expression tag |
| Val 570 | - | expression tag |
| Asp 571 | - | expression tag |
| His 572 | - | expression tag |
| His 573 | - | expression tag |
| His 574 | - | expression tag |
| His 575 | - | expression tag |
| His 576 | - | expression tag |
| His 577 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 2 |
| Total formula weight | 142999.6 | |
| Branched | Number of molecules | 8 |
| Total formula weight | 9394.4 | |
| Non-Polymers* | Number of molecules | 21 |
| Total formula weight | 2626.6 | |
| All* | Total formula weight | 155020.5 |
